Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC127381.1-201ENST00000555979 939 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AP000240.1-201ENST00000609910 452 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC010632.3-201ENST00000611377 369 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC018926.1-201ENST00000616335 435 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 METTL15-211ENST00000634762 718 ntTSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC002525.1-201ENST00000624392 1622 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AP000542.2-201ENST00000623199 6179 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 PCAT14-202ENST00000627127 3935 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC104964.3-201ENST00000606115 2860 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 MTND4P9-201ENST00000507819 1346 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 RNU6-796P-201ENST00000391086 107 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 HMGB1P20-201ENST00000402555 677 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 RN7SKP273-201ENST00000411392 314 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 SETP15-201ENST00000412724 337 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 VN1R37P-201ENST00000419096 748 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 BX119904.1-201ENST00000432026 348 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 NANOGP9-201ENST00000439890 892 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 RPL7P55-201ENST00000450522 746 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 RPS17P15-201ENST00000475609 349 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 PPM1AP1-201ENST00000502740 1135 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC024558.1-201ENST00000505008 528 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC112198.4-201ENST00000515450 351 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 RN7SKP253-201ENST00000516424 309 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC138832.1-201ENST00000522871 556 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 C1DP5-201ENST00000525775 383 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 MTND5P21-201ENST00000531961 522 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AL049872.1-201ENST00000556323 322 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AGGF1P7-201ENST00000562369 913 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC096996.1-201ENST00000563813 325 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 MIR4260-201ENST00000583107 67 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 SS18L2P2-201ENST00000583960 235 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC090330.1-201ENST00000588646 764 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC015802.2-201ENST00000589690 189 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC009237.13-201ENST00000603193 276 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC087763.1-201ENST00000603391 286 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC005034.4-201ENST00000603612 899 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC105148.1-201ENST00000604961 409 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC025175.1-201ENST00000606482 759 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC022306.3-201ENST00000619930 550 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC009269.6-201ENST00000621778 588 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AP000943.4-201ENST00000622912 357 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 RPL23AP61-201ENST00000623642 466 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 CU639417.4-201ENST00000623928 207 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 AC009229.4-201ENST00000623854 1947 ntBASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
PDLIM3Q53GG5 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms