Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 HMGB3P7-201ENST00000400214 611 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AL158825.1-201ENST00000414735 521 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 GNG5P5-201ENST00000420444 220 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 MRPL50P1-201ENST00000431951 384 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 RPS27P5-201ENST00000444247 244 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 FCF1P6-201ENST00000456841 595 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 HSPE1P22-201ENST00000456856 327 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 RPS4XP12-201ENST00000461747 709 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC008379.1-201ENST00000463655 464 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 RN7SL604P-201ENST00000492589 296 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 RPSAP51-201ENST00000497462 645 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 CAB39P1-201ENST00000502277 460 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 HAUS1P1-201ENST00000505275 832 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC112518.2-201ENST00000508565 425 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC004980.4-201ENST00000513375 203 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 OR8X1P-201ENST00000534542 869 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 EIF1P5-201ENST00000585002 234 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC025175.1-201ENST00000606482 759 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 GVINP1-202ENST00000531871 7271 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 AC008432.1-201ENST00000615912 1320 ntBASIC5.21□□□□□ -1.58
COL28A1Q2UY09 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
COL28A1Q2UY09 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 TMEM161BP1-201ENST00000457388 1457 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 VPS35P1-201ENST00000563400 1518 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 RN7SKP185-201ENST00000362813 326 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 RNA5SP87-201ENST00000384155 118 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 ATP5HP3-201ENST00000396994 486 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 RPL5P19-201ENST00000404228 893 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AL445213.1-201ENST00000412589 747 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC211486.3-201ENST00000412694 621 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 XKRYP4-201ENST00000414395 483 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AL133482.1-201ENST00000415988 498 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC019050.1-201ENST00000418508 492 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 RNGTTP1-201ENST00000420965 728 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 HSFY1P1-201ENST00000423928 1178 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC008072.1-201ENST00000434254 824 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC006335.2-201ENST00000437993 330 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 XKRYP5-201ENST00000449659 483 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 RPL7P55-201ENST00000450522 746 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 PSMC1P13-201ENST00000458195 985 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC091180.1-201ENST00000462104 372 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 ATP5G1P3-201ENST00000463301 410 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 RPS7P6-201ENST00000485777 579 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 MTCO3P27-201ENST00000514397 196 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 RNU6-1308P-201ENST00000516817 103 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AP003355.1-201ENST00000518956 587 ntBASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.2□□□□□ -1.58
COL28A1Q2UY09 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms