Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RPL19P11-201ENST00000495944 589 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC105252.1-201ENST00000503089 286 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AC083906.1-201ENST00000509298 406 ntBASIC6.1□□□□□ -1.43
RNF4P78317 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC6.1□□□□□ -1.43
RNF4P78317 AC022483.1-201ENST00000514020 567 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC6.1□□□□□ -1.43
RNF4P78317 SCARNA5-201ENST00000516201 276 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC6.1□□□□□ -1.43
RNF4P78317 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC6.1□□□□□ -1.43
RNF4P78317 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC6.1□□□□□ -1.43
RNF4P78317 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC6.1□□□□□ -1.43
RNF4P78317 RN7SL208P-201ENST00000577964 296 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC6.1□□□□□ -1.43
RNF4P78317 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC6.1□□□□□ -1.43
RNF4P78317 AC020765.1-201ENST00000604296 328 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC6.1□□□□□ -1.43
RNF4P78317 AC015819.1-201ENST00000613588 663 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC027807.2-201ENST00000616099 408 ntBASIC6.1□□□□□ -1.43
RNF4P78317 U1.41-201ENST00000617626 165 ntBASIC6.1□□□□□ -1.43
RNF4P78317 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AC138649.3-201ENST00000622154 254 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC114546.4-201ENST00000624413 369 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AC105114.1-201ENST00000624795 1862 ntBASIC6.1□□□□□ -1.43
RNF4P78317 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
RNF4P78317 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
RNF4P78317 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.1□□□□□ -1.43
RNF4P78317 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
RNF4P78317 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
RNF4P78317 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
RNF4P78317 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
RNF4P78317 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
RNF4P78317 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.09□□□□□ -1.43
RNF4P78317 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
RNF4P78317 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 MTND4P29-201ENST00000503122 1372 ntBASIC6.09□□□□□ -1.43
RNF4P78317 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.09□□□□□ -1.43
RNF4P78317 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC6.09□□□□□ -1.43
RNF4P78317 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 RN7SKP186-201ENST00000365371 303 ntBASIC6.09□□□□□ -1.43
RNF4P78317 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
RNF4P78317 RPS3AP23-201ENST00000401762 784 ntBASIC6.09□□□□□ -1.43
RNF4P78317 AL139098.1-201ENST00000407291 389 ntBASIC6.09□□□□□ -1.43
RNF4P78317 LSM5-205ENST00000409952 687 ntTSL 4 BASIC6.09□□□□□ -1.43
RNF4P78317 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 RN7SKP146-201ENST00000410242 334 ntBASIC6.09□□□□□ -1.43
RNF4P78317 AC109780.2-201ENST00000413467 845 ntBASIC6.09□□□□□ -1.43
RNF4P78317 NPM1P4-201ENST00000414095 812 ntBASIC6.09□□□□□ -1.43
RNF4P78317 AL512649.1-201ENST00000428997 581 ntBASIC6.09□□□□□ -1.43
RNF4P78317 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 MTND3P21-201ENST00000433774 331 ntBASIC6.09□□□□□ -1.43
RNF4P78317 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
RNF4P78317 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 NFU1P2-201ENST00000448700 469 ntBASIC6.09□□□□□ -1.43
RNF4P78317 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 AL672167.3-201ENST00000465951 960 ntBASIC6.09□□□□□ -1.43
RNF4P78317 RPS3AP17-201ENST00000472594 777 ntBASIC6.09□□□□□ -1.43
RNF4P78317 AC063943.2-201ENST00000495697 534 ntBASIC6.09□□□□□ -1.43
RNF4P78317 FTH1P8-201ENST00000498161 514 ntBASIC6.09□□□□□ -1.43
RNF4P78317 ST13P12-201ENST00000508958 1094 ntBASIC6.09□□□□□ -1.43
RNF4P78317 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC6.09□□□□□ -1.43
RNF4P78317 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.09□□□□□ -1.43
RNF4P78317 AC093664.1-201ENST00000511779 289 ntBASIC6.09□□□□□ -1.43
RNF4P78317 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC6.09□□□□□ -1.43
RNF4P78317 Y_RNA.702-201ENST00000516843 96 ntBASIC6.09□□□□□ -1.43
RNF4P78317 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.09□□□□□ -1.43
RNF4P78317 IGHV3-57-201ENST00000520143 280 ntBASIC6.09□□□□□ -1.43
RNF4P78317 OSBPL9P2-201ENST00000526582 1228 ntBASIC6.09□□□□□ -1.43
RNF4P78317 AC023245.2-201ENST00000530760 2978 ntBASIC6.09□□□□□ -1.43
RNF4P78317 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC6.09□□□□□ -1.43
RNF4P78317 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms