Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSH6P52701 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSH6P52701 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
MSH6P52701 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
MSH6P52701 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
MSH6P52701 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.59□□□□□ -1.36
MSH6P52701 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
MSH6P52701 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC6.58□□□□□ -1.36
MSH6P52701 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.58□□□□□ -1.36
MSH6P52701 STX3-208ENST00000641815 3236 ntBASIC6.58□□□□□ -1.36
MSH6P52701 MIR208A-201ENST00000362287 71 ntBASIC6.58□□□□□ -1.36
MSH6P52701 SNORA62.3-201ENST00000365110 153 ntBASIC6.58□□□□□ -1.36
MSH6P52701 MIR554-201ENST00000384874 96 ntBASIC6.58□□□□□ -1.36
MSH6P52701 RPL23AP26-201ENST00000412728 464 ntBASIC6.58□□□□□ -1.36
MSH6P52701 AC105137.1-201ENST00000484355 562 ntBASIC6.58□□□□□ -1.36
MSH6P52701 AC010476.1-201ENST00000519111 851 ntBASIC6.58□□□□□ -1.36
MSH6P52701 AP003730.1-201ENST00000524605 285 ntBASIC6.58□□□□□ -1.36
MSH6P52701 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC6.58□□□□□ -1.36
MSH6P52701 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC6.58□□□□□ -1.36
MSH6P52701 PSMB7P1-201ENST00000556349 514 ntBASIC6.58□□□□□ -1.36
MSH6P52701 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.58□□□□□ -1.36
MSH6P52701 U3.53-201ENST00000628922 216 ntBASIC6.58□□□□□ -1.36
MSH6P52701 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
MSH6P52701 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC6.58□□□□□ -1.36
MSH6P52701 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
MSH6P52701 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 SPRR2C-201ENST00000290702 219 ntBASIC6.57□□□□□ -1.36
MSH6P52701 RPL12P9-201ENST00000412942 488 ntBASIC6.57□□□□□ -1.36
MSH6P52701 TMBIM7P-201ENST00000418074 855 ntBASIC6.57□□□□□ -1.36
MSH6P52701 RPS17P8-201ENST00000434525 335 ntBASIC6.57□□□□□ -1.36
MSH6P52701 RPS3AP54-201ENST00000435535 734 ntBASIC6.57□□□□□ -1.36
MSH6P52701 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC6.57□□□□□ -1.36
MSH6P52701 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC6.57□□□□□ -1.36
MSH6P52701 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC6.57□□□□□ -1.36
MSH6P52701 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.57□□□□□ -1.36
MSH6P52701 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC6.57□□□□□ -1.36
MSH6P52701 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC6.57□□□□□ -1.36
MSH6P52701 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC6.57□□□□□ -1.36
MSH6P52701 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC6.57□□□□□ -1.36
MSH6P52701 PRPF19P1-201ENST00000584766 898 ntBASIC6.57□□□□□ -1.36
MSH6P52701 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
MSH6P52701 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC6.57□□□□□ -1.36
MSH6P52701 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.57□□□□□ -1.36
MSH6P52701 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.57□□□□□ -1.36
MSH6P52701 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 MIR133A2-201ENST00000347538 102 ntBASIC6.57□□□□□ -1.36
MSH6P52701 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC6.57□□□□□ -1.36
MSH6P52701 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSH6P52701 AL590762.2-201ENST00000395798 571 ntBASIC6.57□□□□□ -1.36
MSH6P52701 RN7SKP16-201ENST00000410180 299 ntBASIC6.57□□□□□ -1.36
MSH6P52701 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC6.57□□□□□ -1.36
MSH6P52701 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC6.57□□□□□ -1.36
MSH6P52701 AC073073.1-201ENST00000493920 463 ntBASIC6.57□□□□□ -1.36
MSH6P52701 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.57□□□□□ -1.36
MSH6P52701 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC6.57□□□□□ -1.36
MSH6P52701 AC022884.2-201ENST00000578535 580 ntBASIC6.57□□□□□ -1.36
MSH6P52701 RN7SL176P-201ENST00000580352 264 ntBASIC6.57□□□□□ -1.36
MSH6P52701 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC6.57□□□□□ -1.36
MSH6P52701 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC6.57□□□□□ -1.36
MSH6P52701 MIR6075-201ENST00000620782 95 ntBASIC6.57□□□□□ -1.36
MSH6P52701 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.57□□□□□ -1.36
MSH6P52701 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC6.57□□□□□ -1.36
MSH6P52701 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSH6P52701 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC6.56□□□□□ -1.36
MSH6P52701 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.56□□□□□ -1.36
MSH6P52701 ZFRP1-201ENST00000457579 2970 ntBASIC6.56□□□□□ -1.36
MSH6P52701 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSH6P52701 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSH6P52701 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
MSH6P52701 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.56□□□□□ -1.36
MSH6P52701 MAPK10-304ENST00000641341 3984 ntBASIC6.56□□□□□ -1.36
MSH6P52701 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSH6P52701 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSH6P52701 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.56□□□□□ -1.36
MSH6P52701 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSH6P52701 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
MSH6P52701 RNA5SP387-201ENST00000364226 106 ntBASIC6.56□□□□□ -1.36
MSH6P52701 OR1L6-202ENST00000373684 1044 ntBASIC6.56□□□□□ -1.36
MSH6P52701 RN7SKP202-201ENST00000410439 330 ntBASIC6.56□□□□□ -1.36
MSH6P52701 GLUD1P9-201ENST00000420997 1173 ntBASIC6.56□□□□□ -1.36
MSH6P52701 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
MSH6P52701 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSH6P52701 AC011998.1-201ENST00000433403 117 ntBASIC6.56□□□□□ -1.36
MSH6P52701 RPL23AP93-201ENST00000440847 484 ntBASIC6.56□□□□□ -1.36
MSH6P52701 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC6.56□□□□□ -1.36
MSH6P52701 AC108463.1-201ENST00000450258 347 ntBASIC6.56□□□□□ -1.36
MSH6P52701 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC6.56□□□□□ -1.36
MSH6P52701 RPS7P7-201ENST00000463499 571 ntBASIC6.56□□□□□ -1.36
MSH6P52701 OR7A19P-201ENST00000608051 733 ntBASIC6.56□□□□□ -1.36
MSH6P52701 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms