Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A1P20908 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 AC022417.1-201ENST00000624768 1303 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.53□□□□□ -1.68
COL5A1P20908 AL731566.1-201ENST00000620490 1937 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 NCOA4P2-201ENST00000340589 1813 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC4.53□□□□□ -1.68
COL5A1P20908 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
COL5A1P20908 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A1P20908 AL360270.2-201ENST00000562952 5985 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
COL5A1P20908 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A1P20908 AP000580.1-201ENST00000404439 358 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 CEACAMP8-201ENST00000413902 580 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A1P20908 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.53□□□□□ -1.68
COL5A1P20908 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 RN7SL558P-201ENST00000497468 299 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.53□□□□□ -1.68
COL5A1P20908 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC4.53□□□□□ -1.68
COL5A1P20908 AL359219.2-201ENST00000555184 348 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.53□□□□□ -1.68
COL5A1P20908 MIR4298-201ENST00000584380 73 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 AC006130.2-201ENST00000586202 326 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 AC002069.2-201ENST00000603580 883 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.53□□□□□ -1.68
COL5A1P20908 AL049536.1-201ENST00000625043 744 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 AC006453.5-201ENST00000636451 619 ntBASIC4.53□□□□□ -1.68
COL5A1P20908 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL5A1P20908 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.53□□□□□ -1.68
COL5A1P20908 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A1P20908 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
COL5A1P20908 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A1P20908 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A1P20908 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A1P20908 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.52□□□□□ -1.69
COL5A1P20908 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A1P20908 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A1P20908 RN7SKP224-201ENST00000364140 325 ntBASIC4.52□□□□□ -1.69
COL5A1P20908 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.52□□□□□ -1.69
COL5A1P20908 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC4.52□□□□□ -1.69
COL5A1P20908 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.52□□□□□ -1.69
COL5A1P20908 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.52□□□□□ -1.69
COL5A1P20908 RPL7AP52-201ENST00000458096 790 ntBASIC4.52□□□□□ -1.69
COL5A1P20908 CYCSP34-201ENST00000458172 304 ntBASIC4.52□□□□□ -1.69
COL5A1P20908 AC106806.2-201ENST00000509365 500 ntBASIC4.52□□□□□ -1.69
COL5A1P20908 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.52□□□□□ -1.69
COL5A1P20908 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.52□□□□□ -1.69
COL5A1P20908 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC4.52□□□□□ -1.69
COL5A1P20908 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A1P20908 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A1P20908 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
COL5A1P20908 TEK-205ENST00000615002 4666 ntTSL 5 BASIC4.52□□□□□ -1.69
COL5A1P20908 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC4.52□□□□□ -1.69
COL5A1P20908 CYP1D1P-201ENST00000416662 1433 ntBASIC4.52□□□□□ -1.69
COL5A1P20908 AC135352.1-201ENST00000506173 1418 ntBASIC4.52□□□□□ -1.69
COL5A1P20908 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A1P20908 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A1P20908 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
COL5A1P20908 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC4.52□□□□□ -1.69
COL5A1P20908 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.52□□□□□ -1.69
COL5A1P20908 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A1P20908 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A1P20908 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.51□□□□□ -1.69
COL5A1P20908 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.51□□□□□ -1.69
COL5A1P20908 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.51□□□□□ -1.69
COL5A1P20908 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.51□□□□□ -1.69
COL5A1P20908 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.51□□□□□ -1.69
COL5A1P20908 IGKV2-23-201ENST00000518729 323 ntBASIC4.51□□□□□ -1.69
COL5A1P20908 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC4.51□□□□□ -1.69
COL5A1P20908 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.51□□□□□ -1.69
COL5A1P20908 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC4.51□□□□□ -1.69
COL5A1P20908 OR7A19P-201ENST00000608051 733 ntBASIC4.51□□□□□ -1.69
COL5A1P20908 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.51□□□□□ -1.69
COL5A1P20908 ZYXP1-201ENST00000617638 118 ntBASIC4.51□□□□□ -1.69
COL5A1P20908 AC017104.4-201ENST00000636283 1592 ntBASIC4.51□□□□□ -1.69
COL5A1P20908 MIR492-201ENST00000638676 116 ntBASIC4.51□□□□□ -1.69
COL5A1P20908 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
COL5A1P20908 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC4.51□□□□□ -1.69
COL5A1P20908 STX3-208ENST00000641815 3236 ntBASIC4.51□□□□□ -1.69
COL5A1P20908 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.51□□□□□ -1.69
COL5A1P20908 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A1P20908 SNORA11.1-201ENST00000408133 129 ntBASIC4.51□□□□□ -1.69
COL5A1P20908 AC011933.1-201ENST00000413334 321 ntBASIC4.51□□□□□ -1.69
COL5A1P20908 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.51□□□□□ -1.69
COL5A1P20908 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.51□□□□□ -1.69
COL5A1P20908 AC116533.1-201ENST00000459748 321 ntBASIC4.51□□□□□ -1.69
COL5A1P20908 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms