Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 AC090568.2-203ENST00000521433 579 ntTSL 4 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 AC109460.4-201ENST00000561471 454 ntTSL 3 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 ZNF585B-207ENST00000586320 403 ntTSL 3 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 AC093063.1-201ENST00000599317 363 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 CARSP1-201ENST00000603171 889 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 SNX29P2-204ENST00000603801 875 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 IGHV3-29-201ENST00000604817 344 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 VDAC1P8-210ENST00000610068 1251 ntTSL 5 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 KDM5DP1-201ENST00000622542 298 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 AC145207.9-201ENST00000623802 325 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 AC010653.3-201ENST00000635332 232 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 MIR3120-201ENST00000636555 81 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 U6.104-201ENST00000637979 90 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 CLDN12-201ENST00000287916 3565 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 MORC1-202ENST00000483760 3056 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 FHL1-216ENST00000535737 2325 ntTSL 3 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 GTF2IRD2P1-201ENST00000449689 2749 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 C3orf30-201ENST00000295622 1814 ntAPPRIS P2 TSL 1 (best) BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 ENOX1-AS1-201ENST00000444442 3907 ntTSL 5 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 AL449283.1-201ENST00000602631 3403 ntBASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 ADAM3A-205ENST00000481351 2379 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 TMPPE-202ENST00000416695 3451 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 AC106712.1-201ENST00000483840 1888 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
VPS9D1Q9Y2B5 SP140-203ENST00000392045 3246 ntAPPRIS P3 TSL 2 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 DDX24-201ENST00000330836 2738 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 TFG-204ENST00000476228 1783 ntAPPRIS ALT1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 THOC1-201ENST00000261600 2087 ntAPPRIS P2 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 FANCL-201ENST00000233741 1683 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 FANCL-202ENST00000402135 1698 ntAPPRIS ALT1 TSL 2 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AC104581.5-201ENST00000624171 7141 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 PSMC2-203ENST00000435765 3054 ntAPPRIS P1 TSL 5 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 PRAC1-201ENST00000290294 386 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 TPPP2-201ENST00000321760 752 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 CPSF4L-201ENST00000344935 647 ntAPPRIS P2 TSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 RNU6-490P-201ENST00000362985 107 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 SNORD113-7-201ENST00000363762 77 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 Y_RNA.212-201ENST00000364177 102 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 Y_RNA.428-201ENST00000384078 102 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 C14orf2-202ENST00000414262 842 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 GJA6P-201ENST00000415117 1042 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 ATG3P1-201ENST00000419507 911 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 RPS15AP10-201ENST00000432472 382 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 EIF3IP1-201ENST00000433048 967 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 ANKRD54P1-201ENST00000433115 471 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AC096775.1-201ENST00000437724 448 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 LINC00350-201ENST00000438640 422 ntTSL 5 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 MTND1P17-201ENST00000448961 204 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 TNR-IT1-201ENST00000455447 630 ntTSL 3 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AC080129.1-201ENST00000457815 406 ntTSL 3 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 RPL35AP28-201ENST00000459730 331 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 RPL34P29-201ENST00000491411 325 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 ALDH7A1P3-201ENST00000492517 345 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AL031073.1-201ENST00000503029 1139 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 HSPD1P15-201ENST00000505573 1122 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 CWC27-204ENST00000508024 2103 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 RNU6-475P-201ENST00000516073 104 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 RNU6-714P-201ENST00000516963 103 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 SNORD116.3-201ENST00000517176 78 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 GZMB-205ENST00000526004 819 ntTSL 3 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 OR5D17P-201ENST00000531492 978 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 LRTOMT-212ENST00000536917 579 ntTSL 3 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AC079313.2-201ENST00000550474 564 ntTSL 4 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 LINC01588-213ENST00000557142 492 ntTSL 3 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 MIR5186-201ENST00000577504 120 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 PPIAP14-201ENST00000577627 496 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 LINC00663-205ENST00000589508 432 ntTSL 3 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 FARSA-AS1-201ENST00000592636 241 ntTSL 5 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 OR7A18P-201ENST00000600416 277 ntBASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 EDRF1-AS1-205ENST00000601363 712 ntTSL 5 BASIC7.74□□□□□ -1.17
VPS9D1Q9Y2B5 MIR6872-201ENST00000612981 62 ntBASIC7.74□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms