Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 AC130352.1-201ENST00000602979 661 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS39Q96JC1 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS39Q96JC1 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS39Q96JC1 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 RNU6-618P-201ENST00000363518 112 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS39Q96JC1 RNU6-146P-201ENST00000384602 108 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 RN7SKP114-201ENST00000410327 279 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 RN7SKP97-201ENST00000410966 333 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 BTF3P9-201ENST00000418784 283 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC048351.1-201ENST00000420064 602 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 PPIAP20-201ENST00000449839 135 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 HMGB1P4-201ENST00000455362 567 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 PSMC1P13-201ENST00000458195 985 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 RNU6-1218P-201ENST00000458990 108 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 RPL5P13-201ENST00000462840 709 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 PPIAP21-201ENST00000464473 501 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC009127.1-201ENST00000467090 155 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 RPL7L1P4-201ENST00000513004 707 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 ATP5LP3-201ENST00000514223 304 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 ENPP7P9-201ENST00000514456 627 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 RNU6-347P-201ENST00000516658 105 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 RN7SKP260-201ENST00000516907 149 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC012339.2-201ENST00000523996 453 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC005868.1-201ENST00000536421 331 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 TRAV11-201ENST00000539512 339 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS39Q96JC1 AL049830.4-201ENST00000555149 351 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 FKBP1AP1-201ENST00000594588 318 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC090953.1-201ENST00000604305 1092 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 RPL23AP61-201ENST00000623642 466 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 CASC19-222ENST00000641321 1173 ntBASIC5.01□□□□□ -1.61
VPS39Q96JC1 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS39Q96JC1 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS39Q96JC1 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS39Q96JC1 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS39Q96JC1 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5□□□□□ -1.61
VPS39Q96JC1 ZNF733P-202ENST00000444809 1573 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5□□□□□ -1.61
VPS39Q96JC1 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS39Q96JC1 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.61
VPS39Q96JC1 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS39Q96JC1 RN7SKP162-201ENST00000363605 345 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 RNU1-43P-201ENST00000365052 165 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
VPS39Q96JC1 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5□□□□□ -1.61
VPS39Q96JC1 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5□□□□□ -1.61
VPS39Q96JC1 HNRNPA3P4-201ENST00000427514 803 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 CFL1P1-202ENST00000432948 411 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS39Q96JC1 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5□□□□□ -1.61
VPS39Q96JC1 AL357520.1-201ENST00000441557 453 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 AL354714.3-201ENST00000447284 493 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 EIF2S2P4-201ENST00000461070 984 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5□□□□□ -1.61
VPS39Q96JC1 AC010627.1-201ENST00000503819 1294 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 ATG10-AS1-201ENST00000504846 648 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 AC091917.2-201ENST00000505002 744 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS39Q96JC1 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5□□□□□ -1.61
VPS39Q96JC1 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5□□□□□ -1.61
VPS39Q96JC1 RNA5SP303-201ENST00000516192 130 ntBASIC5□□□□□ -1.61
VPS39Q96JC1 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5□□□□□ -1.61
VPS39Q96JC1 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5□□□□□ -1.61
VPS39Q96JC1 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS39Q96JC1 AC068446.3-201ENST00000555285 382 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 125.8 ms