Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNU6-1005P-201ENST00000384519 107 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 MIR130A-201ENST00000385274 89 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC005042.1-201ENST00000393397 800 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 ATF1P1-201ENST00000406040 927 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC211486.3-201ENST00000412694 621 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 TATDN1P1-201ENST00000414123 891 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 RPL6P29-201ENST00000414863 865 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 RPL26P29-201ENST00000415623 438 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AL133482.1-201ENST00000415988 498 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 NIFKP3-201ENST00000417799 865 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AL157827.1-201ENST00000447622 132 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 SYT14P1-201ENST00000481459 721 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC068587.1-201ENST00000483613 781 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC107398.1-201ENST00000486904 505 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC112518.2-201ENST00000508565 425 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 SOX5P1-201ENST00000524155 1127 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 MINCR-206ENST00000524335 499 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC122688.1-201ENST00000541494 223 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 CBX3P2-202ENST00000583365 535 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 MIR8084-201ENST00000614105 89 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 OR11H2-202ENST00000641517 1085 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AL445437.1-201ENST00000623157 3087 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 DDX18P3-201ENST00000404856 2007 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 AC090971.4-201ENST00000560291 1800 ntBASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
PDLIM3Q53GG5 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC092376.2-201ENST00000622621 4116 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AL451142.2-201ENST00000429076 2090 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 PHKBP1-201ENST00000450951 1951 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 U3.28-201ENST00000391249 210 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AL354890.1-201ENST00000413730 346 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AL121878.1-201ENST00000418638 859 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 RIMKLBP2-201ENST00000424737 654 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 HSPE1P16-201ENST00000426640 348 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 TMEM183AP1-205ENST00000432739 290 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 NDUFB4P8-201ENST00000435351 367 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 TMX2P1-201ENST00000436507 708 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 EIF4A1P11-201ENST00000451239 222 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC079841.1-201ENST00000481228 950 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 RN7SL570P-201ENST00000484405 292 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 RN7SL346P-201ENST00000491561 294 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 OR8G3P-201ENST00000533406 921 ntBASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC4.57□□□□□ -1.68
PDLIM3Q53GG5 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms