Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 NPM1P41-201ENST00000512920 831 ntBASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 AC006349.1-201ENST00000555526 235 ntBASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 AC002069.2-201ENST00000603580 883 ntBASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 AC073136.1-201ENST00000449426 2884 ntBASIC5.8□□□□□ -1.48
CCDC88AQ3V6T2 AC002525.1-201ENST00000624392 1622 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 ARL4AP5-201ENST00000404372 599 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 RGS17P1-201ENST00000423358 553 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 RPL23AP83-201ENST00000434984 473 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AL450023.3-201ENST00000440592 271 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 RPL7P50-201ENST00000600588 727 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AL161756.2-201ENST00000604597 246 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AL034370.1-201ENST00000397254 1590 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AL137141.1-201ENST00000624622 4836 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AC021660.1-201ENST00000465006 554 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 AC053481.3-201ENST00000577881 843 ntBASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC88AQ3V6T2 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 RNU6-761P-201ENST00000384148 107 ntBASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 TRAV35-201ENST00000390462 330 ntBASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 NUTF2P3-201ENST00000448540 384 ntBASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.78□□□□□ -1.48
CCDC88AQ3V6T2 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 RNU1-94P-201ENST00000362627 173 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 VN1R34P-201ENST00000447387 883 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 MIR4444-1-201ENST00000581696 74 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 MIR4444-2-201ENST00000584390 74 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AC017100.2-201ENST00000584628 355 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AC073091.2-201ENST00000603205 907 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AL049794.2-201ENST00000616301 365 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AC017104.4-201ENST00000636283 1592 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AC008758.3-201ENST00000507003 1829 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms