Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 UGP2-231ENST00000627474 264 ntTSL 5 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 MAPK10-338ENST00000641647 3362 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 CDC27P2-201ENST00000425026 1922 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 AC012321.1-201ENST00000561622 1588 ntBASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
PTCHD3Q3KNS1 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 RN7SKP185-201ENST00000362813 326 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 RNU6-666P-201ENST00000363499 107 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 ATP5F1P2-201ENST00000398143 760 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AL391361.1-201ENST00000405580 489 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 OR3A2-201ENST00000408891 1076 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC105402.1-201ENST00000413336 545 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 BMS1P17-202ENST00000416720 316 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 TNPO1P1-201ENST00000423641 1138 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 MTCO1P52-201ENST00000433928 531 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC138761.5-201ENST00000433967 325 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 MTCYBP42-201ENST00000444653 1130 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC005297.1-201ENST00000444765 862 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AL596266.1-201ENST00000448132 400 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 VN1R40P-201ENST00000455196 941 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 PSAT1P4-201ENST00000466500 526 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC021205.1-201ENST00000468797 348 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 RN7SL177P-201ENST00000476596 299 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC122688.1-201ENST00000541494 223 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC007225.2-201ENST00000562529 256 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 MTND4LP24-201ENST00000572277 291 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC114786.1-201ENST00000512892 1415 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC144833.1-201ENST00000567953 4089 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 AC018809.2-201ENST00000602436 3823 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 YES1P1-201ENST00000418510 1628 ntBASIC5.45□□□□□ -1.54
PTCHD3Q3KNS1 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 SEC63P2-201ENST00000503863 1939 ntBASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
PTCHD3Q3KNS1 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms