Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.72□□□□□ -1.33
MSX1P28360 NUP210L-202ENST00000368553 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 MITF-201ENST00000314557 1798 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 ZNF841-203ENST00000594295 3819 ntAPPRIS P1 TSL 3 BASIC6.72□□□□□ -1.33
MSX1P28360 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC6.72□□□□□ -1.33
MSX1P28360 EEF1A1P26-201ENST00000458319 1363 ntBASIC6.72□□□□□ -1.33
MSX1P28360 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 AL591379.1-201ENST00000315293 3739 ntTSL 2 BASIC6.72□□□□□ -1.33
MSX1P28360 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC6.72□□□□□ -1.33
MSX1P28360 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.72□□□□□ -1.33
MSX1P28360 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
MSX1P28360 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 RNU6-777P-201ENST00000364265 104 ntBASIC6.72□□□□□ -1.33
MSX1P28360 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
MSX1P28360 AC245036.1-201ENST00000391727 309 ntBASIC6.72□□□□□ -1.33
MSX1P28360 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 RPL24P7-201ENST00000399435 453 ntBASIC6.72□□□□□ -1.33
MSX1P28360 SNORA11D-201ENST00000408548 128 ntBASIC6.72□□□□□ -1.33
MSX1P28360 SNORA11E-201ENST00000408778 128 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AL355862.1-201ENST00000412705 353 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 AC245054.2-201ENST00000415639 319 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 MTCO2P27-201ENST00000420740 428 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 RPL7P4-203ENST00000430239 730 ntBASIC6.72□□□□□ -1.33
MSX1P28360 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 PHB2P1-201ENST00000434943 890 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AC114755.4-201ENST00000439114 443 ntBASIC6.72□□□□□ -1.33
MSX1P28360 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX1P28360 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX1P28360 ARL2BPP10-201ENST00000446487 531 ntBASIC6.72□□□□□ -1.33
MSX1P28360 SNORA35.1-201ENST00000458908 128 ntBASIC6.72□□□□□ -1.33
MSX1P28360 RN7SL251P-201ENST00000464175 297 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AC009269.1-201ENST00000470368 833 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX1P28360 AC022730.1-201ENST00000473114 568 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AC008040.4-201ENST00000494834 768 ntBASIC6.72□□□□□ -1.33
MSX1P28360 CCDC34P1-201ENST00000507441 517 ntBASIC6.72□□□□□ -1.33
MSX1P28360 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.72□□□□□ -1.33
MSX1P28360 AC093677.1-201ENST00000514414 678 ntBASIC6.72□□□□□ -1.33
MSX1P28360 RFPL4AP3-201ENST00000515267 345 ntBASIC6.72□□□□□ -1.33
MSX1P28360 SNORD60.2-201ENST00000516883 86 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.72□□□□□ -1.33
MSX1P28360 PDCD5P1-201ENST00000543528 309 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX1P28360 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC6.72□□□□□ -1.33
MSX1P28360 FAM30C-201ENST00000561158 410 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AC004817.2-201ENST00000561794 651 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AC006270.2-201ENST00000578523 652 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AC090312.2-201ENST00000582687 378 ntBASIC6.72□□□□□ -1.33
MSX1P28360 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 EIF1-207ENST00000591776 797 ntTSL 4 BASIC6.72□□□□□ -1.33
MSX1P28360 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 AC009597.2-201ENST00000604659 592 ntBASIC6.72□□□□□ -1.33
MSX1P28360 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 AC078899.5-201ENST00000612475 178 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AC040168.1-201ENST00000623594 991 ntBASIC6.72□□□□□ -1.33
MSX1P28360 AC090617.10-201ENST00000624308 134 ntBASIC6.72□□□□□ -1.33
MSX1P28360 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 AC026398.1-201ENST00000413683 3126 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
MSX1P28360 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
MSX1P28360 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC6.72□□□□□ -1.33
MSX1P28360 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 AC010329.1-201ENST00000593903 8328 ntBASIC6.72□□□□□ -1.33
MSX1P28360 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC6.72□□□□□ -1.33
MSX1P28360 OR11H5P-202ENST00000641612 1325 ntBASIC6.72□□□□□ -1.33
MSX1P28360 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
MSX1P28360 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC6.71□□□□□ -1.33
MSX1P28360 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.33
MSX1P28360 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.71□□□□□ -1.33
MSX1P28360 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.33
MSX1P28360 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
MSX1P28360 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
MSX1P28360 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC6.71□□□□□ -1.33
MSX1P28360 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
MSX1P28360 TRIM55-202ENST00000315962 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
MSX1P28360 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC6.71□□□□□ -1.33
MSX1P28360 CAST-234ENST00000511049 3273 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.33
MSX1P28360 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX1P28360 AL162171.3-201ENST00000617439 3178 ntBASIC6.71□□□□□ -1.34
MSX1P28360 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX1P28360 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
MSX1P28360 RNU6-1120P-201ENST00000362988 108 ntBASIC6.71□□□□□ -1.34
MSX1P28360 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX1P28360 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX1P28360 RNU6-456P-201ENST00000384493 107 ntBASIC6.71□□□□□ -1.34
MSX1P28360 RNU6-1158P-201ENST00000391167 107 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC008171.1-201ENST00000395058 200 ntBASIC6.71□□□□□ -1.34
MSX1P28360 CNN3P1-201ENST00000401596 935 ntBASIC6.71□□□□□ -1.34
MSX1P28360 Y_RNA.605-201ENST00000410577 105 ntBASIC6.71□□□□□ -1.34
MSX1P28360 RNU6-1148P-201ENST00000410992 104 ntBASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms