Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
HMGA1P17096 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.79□□□□□ -1.64
HMGA1P17096 UGT2B26P-201ENST00000508672 1613 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 AL391684.1-202ENST00000641293 1636 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HMGA1P17096 AL121839.2-201ENST00000565058 6943 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
HMGA1P17096 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HMGA1P17096 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HMGA1P17096 RNA5SP509-201ENST00000364577 119 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.79□□□□□ -1.64
HMGA1P17096 AC234779.1-201ENST00000425910 285 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HMGA1P17096 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.79□□□□□ -1.64
HMGA1P17096 RPL23AP93-201ENST00000440847 484 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 TCEA1P3-201ENST00000443005 880 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 AL157385.1-201ENST00000446973 268 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 AC093267.1-201ENST00000489176 961 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 RN7SKP122-201ENST00000515923 296 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HMGA1P17096 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.79□□□□□ -1.64
HMGA1P17096 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.79□□□□□ -1.64
HMGA1P17096 MLECP1-201ENST00000615893 709 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 AL121890.3-201ENST00000618494 516 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 AL035461.2-201ENST00000619201 524 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.79□□□□□ -1.64
HMGA1P17096 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HMGA1P17096 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HMGA1P17096 VN2R3P-201ENST00000422626 1412 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 OFD1P8Y-201ENST00000449148 1433 ntBASIC4.79□□□□□ -1.64
HMGA1P17096 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
HMGA1P17096 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC4.79□□□□□ -1.64
HMGA1P17096 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.78□□□□□ -1.64
HMGA1P17096 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.78□□□□□ -1.64
HMGA1P17096 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HMGA1P17096 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
HMGA1P17096 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HMGA1P17096 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HMGA1P17096 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
HMGA1P17096 AL022311.1-201ENST00000623726 19416 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
HMGA1P17096 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.78□□□□□ -1.64
HMGA1P17096 RSL24D1P6-201ENST00000426934 401 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 AC092017.2-201ENST00000427600 362 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.78□□□□□ -1.64
HMGA1P17096 AC104651.2-201ENST00000447549 528 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 RPL23AP24-201ENST00000458203 385 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.78□□□□□ -1.64
HMGA1P17096 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 AC083829.1-201ENST00000503756 657 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 USP9YP2-201ENST00000504503 1000 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 USP9YP1-201ENST00000513521 1002 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.78□□□□□ -1.64
HMGA1P17096 AC090948.1-201ENST00000607464 549 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 AC011944.2-201ENST00000624440 683 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 MIR6830-201ENST00000636015 70 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 OR52H1-202ENST00000641796 1061 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
HMGA1P17096 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HMGA1P17096 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.78□□□□□ -1.64
HMGA1P17096 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HMGA1P17096 AC025031.4-201ENST00000621248 3271 ntBASIC4.78□□□□□ -1.64
HMGA1P17096 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
HMGA1P17096 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HMGA1P17096 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.77□□□□□ -1.65
HMGA1P17096 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HMGA1P17096 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.77□□□□□ -1.65
HMGA1P17096 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
HMGA1P17096 MUC2-202ENST00000613187 4845 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HMGA1P17096 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HMGA1P17096 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
HMGA1P17096 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HMGA1P17096 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC4.77□□□□□ -1.65
HMGA1P17096 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.77□□□□□ -1.65
HMGA1P17096 TMSB10P2-201ENST00000416049 131 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.77□□□□□ -1.65
HMGA1P17096 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.77□□□□□ -1.65
HMGA1P17096 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.77□□□□□ -1.65
HMGA1P17096 FHP1-201ENST00000442741 703 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 AL935212.3-201ENST00000450729 284 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.77□□□□□ -1.65
HMGA1P17096 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC4.77□□□□□ -1.65
HMGA1P17096 RPL10P17-201ENST00000453852 316 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.77□□□□□ -1.65
HMGA1P17096 AC093840.1-201ENST00000511599 336 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 PARP1P2-201ENST00000556806 195 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.77□□□□□ -1.65
HMGA1P17096 AC010503.3-201ENST00000594355 540 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 AC012557.1-201ENST00000607115 611 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.77□□□□□ -1.65
HMGA1P17096 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.77□□□□□ -1.65
HMGA1P17096 AC015914.2-201ENST00000618167 288 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HMGA1P17096 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HMGA1P17096 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
HMGA1P17096 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.77□□□□□ -1.65
HMGA1P17096 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC4.77□□□□□ -1.65
HMGA1P17096 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms