Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.8□□□□□ -1.64
SHOX2O60902 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.8□□□□□ -1.64
SHOX2O60902 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 OR10J6P-201ENST00000289731 930 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SHOX2O60902 RNA5SP335-201ENST00000363817 110 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 RNA5SP22-201ENST00000365393 109 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.8□□□□□ -1.64
SHOX2O60902 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 LINC00993-201ENST00000420453 540 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 RPL21P91-201ENST00000429231 479 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.8□□□□□ -1.64
SHOX2O60902 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.8□□□□□ -1.64
SHOX2O60902 HLA-N-201ENST00000437516 135 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.8□□□□□ -1.64
SHOX2O60902 RPS27AP15-201ENST00000447672 466 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC4.8□□□□□ -1.64
SHOX2O60902 RPL35AP19-201ENST00000469425 329 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.8□□□□□ -1.64
SHOX2O60902 RPL32P9-201ENST00000487963 407 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.8□□□□□ -1.64
SHOX2O60902 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.8□□□□□ -1.64
SHOX2O60902 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.8□□□□□ -1.64
SHOX2O60902 AC022826.1-201ENST00000519383 805 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.8□□□□□ -1.64
SHOX2O60902 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC4.8□□□□□ -1.64
SHOX2O60902 IGKV2-18-201ENST00000522607 343 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.8□□□□□ -1.64
SHOX2O60902 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC4.8□□□□□ -1.64
SHOX2O60902 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.8□□□□□ -1.64
SHOX2O60902 AC135626.1-201ENST00000556983 435 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.8□□□□□ -1.64
SHOX2O60902 AC105036.1-201ENST00000566222 271 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.8□□□□□ -1.64
SHOX2O60902 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.8□□□□□ -1.64
SHOX2O60902 AC015660.5-201ENST00000623238 564 ntBASIC4.8□□□□□ -1.64
SHOX2O60902 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.8□□□□□ -1.64
SHOX2O60902 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.8□□□□□ -1.64
SHOX2O60902 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.8□□□□□ -1.64
SHOX2O60902 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SHOX2O60902 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
SHOX2O60902 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.8□□□□□ -1.64
SHOX2O60902 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
SHOX2O60902 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC4.8□□□□□ -1.64
SHOX2O60902 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.79□□□□□ -1.64
SHOX2O60902 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.79□□□□□ -1.64
SHOX2O60902 CASC19-281ENST00000642118 1554 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 MIR143-201ENST00000385300 106 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.79□□□□□ -1.64
SHOX2O60902 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.79□□□□□ -1.64
SHOX2O60902 RPL21P43-201ENST00000425440 472 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.79□□□□□ -1.64
SHOX2O60902 AL451139.1-201ENST00000434718 346 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 YWHAEP1-201ENST00000453697 763 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 AL672167.3-201ENST00000465951 960 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 RPL23AP2-201ENST00000471227 466 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC4.79□□□□□ -1.64
SHOX2O60902 AC139783.2-201ENST00000504847 1145 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.79□□□□□ -1.64
SHOX2O60902 SSX6-203ENST00000509958 336 ntTSL 3 BASIC4.79□□□□□ -1.64
SHOX2O60902 AP000859.1-201ENST00000525536 307 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.79□□□□□ -1.64
SHOX2O60902 OR10G5P-201ENST00000532733 358 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.79□□□□□ -1.64
SHOX2O60902 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC4.79□□□□□ -1.64
SHOX2O60902 AC015720.2-201ENST00000567709 334 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 MIR3691-201ENST00000578066 90 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 SNORA74C-1-201ENST00000580726 201 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.79□□□□□ -1.64
SHOX2O60902 MRO-208ENST00000588444 866 ntTSL 3 BASIC4.79□□□□□ -1.64
SHOX2O60902 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 AL591926.8-201ENST00000616876 211 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.79□□□□□ -1.64
SHOX2O60902 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.79□□□□□ -1.64
SHOX2O60902 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SHOX2O60902 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.79□□□□□ -1.64
SHOX2O60902 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 AC087190.4-201ENST00000574616 8334 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SHOX2O60902 SMG1P6-201ENST00000532337 2930 ntBASIC4.79□□□□□ -1.64
SHOX2O60902 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SHOX2O60902 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms