Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AC022031.1-201ENST00000585985 2593 ntBASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
LIMD1Q9UGP4 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 THOC1-201ENST00000261600 2087 ntAPPRIS P2 TSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC053481.2-201ENST00000602493 1815 ntTSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 NPIPB6-201ENST00000532254 2016 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AL353795.1-201ENST00000439134 1775 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC138207.6-201ENST00000579164 1967 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC102941.1-201ENST00000567616 1537 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC130304.1-201ENST00000622942 2385 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 Y_RNA.384-201ENST00000383909 102 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AL162578.1-201ENST00000406202 378 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 RBM6-203ENST00000421682 684 ntTSL 2 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 PRUNEP1-201ENST00000425846 705 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 FTLP17-201ENST00000432567 525 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 RPS3AP38-201ENST00000435889 763 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AL031663.1-201ENST00000437445 219 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 RPL5P25-201ENST00000441148 775 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 RPS15AP17-201ENST00000470598 390 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 LY96-202ENST00000518893 430 ntTSL 3 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 CARSP2-201ENST00000520688 277 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC087241.2-201ENST00000535801 324 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 NXPE2P1-201ENST00000543705 726 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AL358334.3-201ENST00000557343 535 ntTSL 3 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC017100.2-201ENST00000584628 355 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 MIR4428-201ENST00000584884 73 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 BX664608.1-201ENST00000610519 487 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
LIMD1Q9UGP4 SLC24A1-209ENST00000537259 3983 ntAPPRIS ALT2 TSL 2 BASIC7.59□□□□□ -1.2
LIMD1Q9UGP4 RFX5-201ENST00000290524 3576 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.2
LIMD1Q9UGP4 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC7.59□□□□□ -1.2
LIMD1Q9UGP4 MFSD4BP1-201ENST00000513330 1552 ntBASIC7.59□□□□□ -1.2
LIMD1Q9UGP4 PPBPP2-201ENST00000513150 1362 ntBASIC7.59□□□□□ -1.2
LIMD1Q9UGP4 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC090643.1-201ENST00000623600 3100 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC020978.6-201ENST00000571197 3177 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 LINC02099-202ENST00000522158 2980 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 TRPS1-208ENST00000519076 3329 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC026398.1-201ENST00000413683 3126 ntAPPRIS P1 TSL 2 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 SCGB1A1-201ENST00000278282 441 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 RNA5SP53-201ENST00000391299 120 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AL590143.1-201ENST00000405071 138 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AL355375.1-201ENST00000405686 392 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 PRELID1P2-201ENST00000407805 396 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 RN7SKP240-201ENST00000410583 375 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 RNA5SP280-201ENST00000411230 115 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AL353777.1-201ENST00000425552 326 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC097468.2-201ENST00000429343 553 ntTSL 4 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 ATP5JP1-201ENST00000431631 322 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AL606489.2-201ENST00000433886 234 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 RPL3P11-201ENST00000434028 1146 ntBASIC7.58□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms