Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 UBE2V1P8-201ENST00000437166 265 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AL645936.1-201ENST00000441979 518 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 RPL6P5-201ENST00000445678 828 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 HIGD1AP16-201ENST00000450986 258 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 RPL21P47-201ENST00000483696 477 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 snoU109.5-201ENST00000516231 132 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 NOP56P3-201ENST00000549457 385 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC087897.1-201ENST00000550134 156 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC007346.1-201ENST00000569208 867 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 MTND1P15-201ENST00000579262 949 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 NDUFB9P1-201ENST00000604683 510 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC069545.1-201ENST00000605671 358 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AL162574.1-201ENST00000615702 950 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AL137067.2-201ENST00000621202 131 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC079776.5-201ENST00000641920 211 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AL133243.2-201ENST00000610331 1621 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC008432.1-201ENST00000615912 1320 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AL031577.2-201ENST00000404133 280 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AL139805.1-201ENST00000407837 289 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 NPM1P4-201ENST00000414095 812 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 ATG4AP1-201ENST00000416893 538 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 ZDHHC20P2-201ENST00000424108 429 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 NAP1L4P2-201ENST00000425958 899 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 RPL30P6-201ENST00000475925 342 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 RPL37P25-201ENST00000507308 276 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 HMGB1P46-201ENST00000520062 610 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 NDUFS5P6-201ENST00000529136 295 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 OR8I1P-201ENST00000529291 931 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 NMNAT1P5-201ENST00000559657 841 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AC009237.13-201ENST00000603193 276 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AL583832.1-201ENST00000603227 784 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 OR7M1P-201ENST00000608946 533 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AL445423.1-201ENST00000609941 536 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AC010678.1-201ENST00000614118 713 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 Y_RNA.804-201ENST00000615262 101 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AC004158.1-201ENST00000564508 4319 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AC006210.2-201ENST00000367074 1545 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 AC011477.1-204ENST00000623416 1325 ntBASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.95□□□□□ -1.3
CCDC39Q9UFE4 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC39Q9UFE4 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms