Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ESD-201ENST00000378697 1079 ntTSL 5 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 RNU6-657P-201ENST00000383904 107 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 U3.52-201ENST00000384034 216 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 Y_RNA.505-201ENST00000384489 102 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 MIR649-201ENST00000384843 97 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 MIR621-201ENST00000384919 96 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AL023807.1-201ENST00000407932 359 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 RPL31-204ENST00000409038 817 ntTSL 2 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AL929472.1-201ENST00000417484 429 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC234779.1-201ENST00000425910 285 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 PMS2P9-201ENST00000441237 515 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 RPL23AP16-201ENST00000441715 421 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 ELOCP30-201ENST00000447108 299 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AL596266.1-201ENST00000448132 400 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 RPL39P6-201ENST00000448289 150 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 CFTRP1-201ENST00000456646 183 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 OR8G3P-201ENST00000533406 921 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC018558.5-201ENST00000565840 952 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 MIR4504-201ENST00000577413 92 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 MIR5095-201ENST00000578844 88 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 KPNA2P3-201ENST00000584190 848 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC063977.7-201ENST00000594454 337 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AL513218.1-201ENST00000606527 391 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AL590240.3-201ENST00000621416 943 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 MIR6806-201ENST00000622141 64 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 AC010325.3-201ENST00000641084 394 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 PABPC1P8-201ENST00000452851 2086 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 CAP1P2-201ENST00000417455 1409 ntBASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC7.26□□□□□ -1.25
TRAIPQ9BWF2 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 BMPR1APS1-201ENST00000403332 1598 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC007114.2-201ENST00000576014 4281 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 ODF3-202ENST00000342593 386 ntTSL 5 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 RNA5SP391-201ENST00000363456 119 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 RNU6-178P-201ENST00000384631 104 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 RNU6-192P-201ENST00000391253 100 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 MIR541-201ENST00000401360 84 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 RN7SKP296-201ENST00000411185 341 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC211486.3-201ENST00000412694 621 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 RANP6-201ENST00000413691 644 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 HMGB1P11-201ENST00000413899 637 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AL139128.1-201ENST00000413921 941 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 ATG4AP1-201ENST00000416893 538 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AL359092.1-201ENST00000417156 265 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 RPS26P47-201ENST00000427219 348 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AL512286.1-201ENST00000439244 400 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 PCNPP2-201ENST00000441651 455 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 MTCO1P19-201ENST00000443487 500 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 CDC27P1-201ENST00000445384 715 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 BMI1P1-201ENST00000445879 941 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC097359.1-201ENST00000447946 463 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 OR52A4P-201ENST00000472867 958 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC011352.2-201ENST00000514574 1016 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC087276.1-201ENST00000529659 480 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 ZNF705CP-201ENST00000530515 889 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AL391156.1-201ENST00000554965 554 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AP001004.1-201ENST00000582468 324 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 CYCSP1-201ENST00000604815 315 ntBASIC7.25□□□□□ -1.25
TRAIPQ9BWF2 AC018816.2-201ENST00000621460 353 ntBASIC7.25□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms