Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 MED28P7-201ENST00000456611 530 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RN7SL834P-201ENST00000461450 286 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RBM43P1-201ENST00000476891 1081 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RPL29P23-201ENST00000486188 442 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 THAP6-203ENST00000502620 582 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 KCTD9P5-201ENST00000504141 1170 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 SAP18P1-201ENST00000512058 390 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 Y_RNA.702-201ENST00000516843 96 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 SCARNA18.2-201ENST00000516882 84 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RNU6-1003P-201ENST00000517099 105 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 NF1P12-201ENST00000549593 583 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC005730.3-201ENST00000583067 366 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC027243.2-201ENST00000602530 724 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC111186.1-201ENST00000604684 130 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AL031777.2-201ENST00000611953 196 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC034229.6-201ENST00000623704 224 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 HSPA8P14-201ENST00000552265 1805 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC016251.2-201ENST00000623393 3089 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 BTK-209ENST00000618050 2417 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 NACA-203ENST00000454682 6629 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 PPBPP2-201ENST00000513150 1362 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC007342.5-201ENST00000571340 2142 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AP002800.1-201ENST00000624982 2225 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AL034417.4-202ENST00000642135 2236 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC016583.1-201ENST00000624221 2431 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 OR9K1P-201ENST00000326513 941 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 RNA5SP114-201ENST00000363780 113 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 SNORD115.1-201ENST00000391109 76 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 HSPD1P16-201ENST00000402302 394 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 SNORA11D-201ENST00000408548 128 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 SNORA11E-201ENST00000408778 128 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 RNA5SP231-201ENST00000410496 138 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AL139413.1-201ENST00000421309 217 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 PIGFP2-201ENST00000421400 651 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AC127526.2-201ENST00000426436 775 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 RPL31P35-201ENST00000431058 377 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 MTND3P23-201ENST00000431980 347 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC140Q96MF4 RPS3AP38-201ENST00000435889 763 ntBASIC5.42□□□□□ -1.54
CCDC140Q96MF4 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms