Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 MIR3691-201ENST00000578066 90 ntBASIC5.39□□□□□ -1.55
PRPF39Q86UA1 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 AL162431.4-201ENST00000604674 411 ntBASIC5.39□□□□□ -1.55
PRPF39Q86UA1 AL445222.1-201ENST00000607259 628 ntBASIC5.39□□□□□ -1.55
PRPF39Q86UA1 AC004948.1-201ENST00000609858 672 ntBASIC5.39□□□□□ -1.55
PRPF39Q86UA1 AC025016.1-201ENST00000616746 682 ntBASIC5.39□□□□□ -1.55
PRPF39Q86UA1 AP001005.3-201ENST00000622049 129 ntBASIC5.39□□□□□ -1.55
PRPF39Q86UA1 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 CYP4F35P-202ENST00000636121 390 ntBASIC5.39□□□□□ -1.55
PRPF39Q86UA1 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 AC006484.1-201ENST00000435086 1884 ntBASIC5.39□□□□□ -1.55
PRPF39Q86UA1 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.39□□□□□ -1.55
PRPF39Q86UA1 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 OR55B1P-203ENST00000641518 2602 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 RPL21P67-201ENST00000402896 478 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 DUTP5-201ENST00000406790 469 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC211486.3-201ENST00000412694 621 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC105402.1-201ENST00000413336 545 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AL121878.1-201ENST00000418638 859 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC021660.1-201ENST00000465006 554 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 RN7SL826P-201ENST00000479724 288 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 RPL7P6-201ENST00000480903 738 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 RN7SL97P-201ENST00000486780 299 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC109462.1-201ENST00000491087 368 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC023424.1-201ENST00000496058 459 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC231760.1-201ENST00000498002 260 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 NIFKP7-201ENST00000503365 834 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AL512310.9-201ENST00000553311 948 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 RN7SL708P-201ENST00000580952 299 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC087763.1-201ENST00000603391 286 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AC095055.1-201ENST00000603472 1113 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 SUMO2P14-201ENST00000604488 293 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AL450270.1-201ENST00000606160 391 ntBASIC5.38□□□□□ -1.55
PRPF39Q86UA1 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
PRPF39Q86UA1 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 AC133552.1-201ENST00000569988 4007 ntBASIC5.37□□□□□ -1.55
PRPF39Q86UA1 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 RNA5SP305-201ENST00000362665 119 ntBASIC5.37□□□□□ -1.55
PRPF39Q86UA1 U3.2-201ENST00000362981 210 ntBASIC5.37□□□□□ -1.55
PRPF39Q86UA1 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 RPL7AP52-201ENST00000458096 790 ntBASIC5.37□□□□□ -1.55
PRPF39Q86UA1 RPL7P41-201ENST00000485823 957 ntBASIC5.37□□□□□ -1.55
PRPF39Q86UA1 RN7SL814P-201ENST00000487715 300 ntBASIC5.37□□□□□ -1.55
PRPF39Q86UA1 RN7SL808P-201ENST00000496066 299 ntBASIC5.37□□□□□ -1.55
PRPF39Q86UA1 RPS4XP20-201ENST00000505751 772 ntBASIC5.37□□□□□ -1.55
PRPF39Q86UA1 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 RN7SKP66-201ENST00000516681 231 ntBASIC5.37□□□□□ -1.55
PRPF39Q86UA1 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 AC022360.1-201ENST00000521058 340 ntBASIC5.37□□□□□ -1.55
PRPF39Q86UA1 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.37□□□□□ -1.55
PRPF39Q86UA1 AC008083.2-201ENST00000546707 476 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms