Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CPHL1P-201ENST00000461341 3407 ntBASIC3.24□□□□□ -1.89
PRKDCP78527 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC3.24□□□□□ -1.89
PRKDCP78527 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
PRKDCP78527 PRNCR1-201ENST00000635449 12727 ntBASIC3.24□□□□□ -1.89
PRKDCP78527 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
PRKDCP78527 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC3.24□□□□□ -1.89
PRKDCP78527 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PRKDCP78527 OR2M4-202ENST00000641868 5934 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
PRKDCP78527 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PRKDCP78527 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
PRKDCP78527 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PRKDCP78527 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC3.24□□□□□ -1.89
PRKDCP78527 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
PRKDCP78527 PSD3-203ENST00000428502 6330 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PRKDCP78527 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
PRKDCP78527 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PRKDCP78527 AP003972.1-201ENST00000625192 5446 ntBASIC3.24□□□□□ -1.89
PRKDCP78527 AC008033.1-201ENST00000216407 1162 ntBASIC3.24□□□□□ -1.89
PRKDCP78527 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
PRKDCP78527 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PRKDCP78527 CCL7-202ENST00000394627 696 ntTSL 3 BASIC3.24□□□□□ -1.89
PRKDCP78527 AL450992.3-201ENST00000413192 568 ntBASIC3.24□□□□□ -1.89
PRKDCP78527 RPL7P4-203ENST00000430239 730 ntBASIC3.24□□□□□ -1.89
PRKDCP78527 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC3.24□□□□□ -1.89
PRKDCP78527 PTMAP3-201ENST00000447474 330 ntBASIC3.24□□□□□ -1.89
PRKDCP78527 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.24□□□□□ -1.89
PRKDCP78527 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PRKDCP78527 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC3.24□□□□□ -1.89
PRKDCP78527 AP001267.4-201ENST00000602598 545 ntBASIC3.24□□□□□ -1.89
PRKDCP78527 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC3.24□□□□□ -1.89
PRKDCP78527 MIR6500-201ENST00000622700 86 ntBASIC3.24□□□□□ -1.89
PRKDCP78527 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC3.24□□□□□ -1.89
PRKDCP78527 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
PRKDCP78527 TRIM66-201ENST00000299550 9753 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC3.23□□□□□ -1.89
PRKDCP78527 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 SHROOM4-203ENST00000460112 8919 ntTSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
PRKDCP78527 OR4A15-201ENST00000314706 1035 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 SNORA5A-201ENST00000384111 134 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 MIR200C-201ENST00000384980 68 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC3.23□□□□□ -1.89
PRKDCP78527 AC073052.1-201ENST00000440417 714 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.23□□□□□ -1.89
PRKDCP78527 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC3.23□□□□□ -1.89
PRKDCP78527 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.23□□□□□ -1.89
PRKDCP78527 AL159169.3-201ENST00000608871 561 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 MIR6133-201ENST00000617057 108 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 AC243960.7-201ENST00000623532 707 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 AP001002.2-201ENST00000625137 386 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 USP45-204ENST00000369233 2514 ntTSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
PRKDCP78527 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.23□□□□□ -1.89
PRKDCP78527 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC3.23□□□□□ -1.89
PRKDCP78527 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.23□□□□□ -1.89
PRKDCP78527 RN7SL517P-201ENST00000462240 305 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 RPL6P9-201ENST00000466502 859 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 AL049873.1-201ENST00000480540 376 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.23□□□□□ -1.89
PRKDCP78527 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC3.23□□□□□ -1.89
PRKDCP78527 AC090181.2-201ENST00000602975 672 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC3.23□□□□□ -1.89
PRKDCP78527 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.23□□□□□ -1.89
PRKDCP78527 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 AC135352.1-201ENST00000506173 1418 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
PRKDCP78527 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
PRKDCP78527 MFSD13B-201ENST00000420133 1290 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 RPL35P6-201ENST00000490024 372 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.23□□□□□ -1.89
PRKDCP78527 KCTD9P2-201ENST00000512203 1013 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 AL031985.2-201ENST00000600955 480 ntBASIC3.23□□□□□ -1.89
PRKDCP78527 ERC1-203ENST00000360905 5789 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
PRKDCP78527 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
PRKDCP78527 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC3.23□□□□□ -1.89
PRKDCP78527 AC011447.7-201ENST00000624228 1590 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms