Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNA5SP312-201ENST00000517068 116 ntBASIC6.65□□□□□ -1.35
MSH6P52701 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
MSH6P52701 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC6.65□□□□□ -1.35
MSH6P52701 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.35
MSH6P52701 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC6.65□□□□□ -1.35
MSH6P52701 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC6.65□□□□□ -1.35
MSH6P52701 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
MSH6P52701 AC103968.1-201ENST00000557841 573 ntBASIC6.65□□□□□ -1.35
MSH6P52701 NDUFB4P11-201ENST00000560510 395 ntBASIC6.65□□□□□ -1.35
MSH6P52701 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC6.65□□□□□ -1.35
MSH6P52701 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.65□□□□□ -1.35
MSH6P52701 AL591034.3-201ENST00000605511 685 ntBASIC6.65□□□□□ -1.35
MSH6P52701 BX005214.3-202ENST00000619809 325 ntBASIC6.65□□□□□ -1.35
MSH6P52701 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.65□□□□□ -1.35
MSH6P52701 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC6.65□□□□□ -1.35
MSH6P52701 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
MSH6P52701 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
MSH6P52701 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC6.65□□□□□ -1.35
MSH6P52701 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.64□□□□□ -1.35
MSH6P52701 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
MSH6P52701 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 AL354766.1-201ENST00000423396 542 ntBASIC6.64□□□□□ -1.35
MSH6P52701 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC6.64□□□□□ -1.35
MSH6P52701 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC6.64□□□□□ -1.35
MSH6P52701 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC6.64□□□□□ -1.35
MSH6P52701 SNRPCP3-201ENST00000474888 476 ntBASIC6.64□□□□□ -1.35
MSH6P52701 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC6.64□□□□□ -1.35
MSH6P52701 IGKV2-23-201ENST00000518729 323 ntBASIC6.64□□□□□ -1.35
MSH6P52701 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.64□□□□□ -1.35
MSH6P52701 OR8A2P-201ENST00000528631 952 ntBASIC6.64□□□□□ -1.35
MSH6P52701 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC6.64□□□□□ -1.35
MSH6P52701 RN7SL652P-201ENST00000577769 300 ntBASIC6.64□□□□□ -1.35
MSH6P52701 IPO5P1-202ENST00000600039 287 ntBASIC6.64□□□□□ -1.35
MSH6P52701 AL121932.1-201ENST00000605542 214 ntBASIC6.64□□□□□ -1.35
MSH6P52701 AL023881.1-201ENST00000621088 301 ntBASIC6.64□□□□□ -1.35
MSH6P52701 AC243960.7-201ENST00000623532 707 ntBASIC6.64□□□□□ -1.35
MSH6P52701 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC6.64□□□□□ -1.35
MSH6P52701 AC093671.1-201ENST00000624981 2929 ntBASIC6.64□□□□□ -1.35
MSH6P52701 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
MSH6P52701 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.64□□□□□ -1.35
MSH6P52701 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSH6P52701 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSH6P52701 ZNF137P-201ENST00000456718 1920 ntBASIC6.63□□□□□ -1.35
MSH6P52701 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSH6P52701 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSH6P52701 RPL23AP59-201ENST00000399415 461 ntBASIC6.63□□□□□ -1.35
MSH6P52701 AL035079.1-201ENST00000405210 287 ntBASIC6.63□□□□□ -1.35
MSH6P52701 SNORA11.1-201ENST00000408133 129 ntBASIC6.63□□□□□ -1.35
MSH6P52701 OR13Z1P-201ENST00000416141 834 ntBASIC6.63□□□□□ -1.35
MSH6P52701 TEX41-203ENST00000420472 765 ntTSL 3 BASIC6.63□□□□□ -1.35
MSH6P52701 RCC2P2-201ENST00000422174 918 ntBASIC6.63□□□□□ -1.35
MSH6P52701 RPS29P17-201ENST00000430795 166 ntBASIC6.63□□□□□ -1.35
MSH6P52701 HSFY6P-201ENST00000445573 403 ntBASIC6.63□□□□□ -1.35
MSH6P52701 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC6.63□□□□□ -1.35
MSH6P52701 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.63□□□□□ -1.35
MSH6P52701 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC6.63□□□□□ -1.35
MSH6P52701 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC6.63□□□□□ -1.35
MSH6P52701 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
MSH6P52701 AC092709.1-201ENST00000521355 1045 ntBASIC6.63□□□□□ -1.35
MSH6P52701 OR8R1P-201ENST00000543943 764 ntBASIC6.63□□□□□ -1.35
MSH6P52701 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC6.63□□□□□ -1.35
MSH6P52701 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.63□□□□□ -1.35
MSH6P52701 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.63□□□□□ -1.35
MSH6P52701 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC6.63□□□□□ -1.35
MSH6P52701 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
MSH6P52701 OR14L1P-202ENST00000641545 3009 ntBASIC6.63□□□□□ -1.35
MSH6P52701 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC6.63□□□□□ -1.35
MSH6P52701 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSH6P52701 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.63□□□□□ -1.35
MSH6P52701 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
MSH6P52701 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
MSH6P52701 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
MSH6P52701 SMG1P6-201ENST00000532337 2930 ntBASIC6.62□□□□□ -1.35
MSH6P52701 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
MSH6P52701 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSH6P52701 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSH6P52701 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
MSH6P52701 RNU1-82P-201ENST00000390851 165 ntBASIC6.62□□□□□ -1.35
MSH6P52701 RNA5SP241-201ENST00000391326 114 ntBASIC6.62□□□□□ -1.35
MSH6P52701 AC011933.1-201ENST00000413334 321 ntBASIC6.62□□□□□ -1.35
MSH6P52701 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC6.62□□□□□ -1.35
MSH6P52701 RPL7AP25-201ENST00000423357 805 ntBASIC6.62□□□□□ -1.35
MSH6P52701 AL358232.1-201ENST00000448030 501 ntBASIC6.62□□□□□ -1.35
MSH6P52701 GAPDHP14-201ENST00000450472 937 ntBASIC6.62□□□□□ -1.35
MSH6P52701 AC116533.1-201ENST00000459748 321 ntBASIC6.62□□□□□ -1.35
MSH6P52701 RPL21P126-201ENST00000470049 478 ntBASIC6.62□□□□□ -1.35
MSH6P52701 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC6.62□□□□□ -1.35
MSH6P52701 AC109635.6-201ENST00000525487 1113 ntBASIC6.62□□□□□ -1.35
MSH6P52701 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC6.62□□□□□ -1.35
MSH6P52701 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC6.62□□□□□ -1.35
MSH6P52701 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms