Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.47□□□□□ -1.69
CDX1P47902 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CDX1P47902 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.47□□□□□ -1.69
CDX1P47902 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
CDX1P47902 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CDX1P47902 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CDX1P47902 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CDX1P47902 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
CDX1P47902 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
CDX1P47902 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
CDX1P47902 MTND4P31-201ENST00000425607 1343 ntBASIC4.46□□□□□ -1.69
CDX1P47902 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
CDX1P47902 VN2R3P-201ENST00000422626 1412 ntBASIC4.46□□□□□ -1.69
CDX1P47902 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.46□□□□□ -1.69
CDX1P47902 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
CDX1P47902 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.46□□□□□ -1.69
CDX1P47902 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.46□□□□□ -1.69
CDX1P47902 PWAR1-201ENST00000624188 2414 ntBASIC4.46□□□□□ -1.69
CDX1P47902 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.69
CDX1P47902 AP004607.3-201ENST00000530354 3915 ntBASIC4.46□□□□□ -1.69
CDX1P47902 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
CDX1P47902 AC107027.3-201ENST00000565095 3473 ntBASIC4.46□□□□□ -1.7
CDX1P47902 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
CDX1P47902 AC090017.1-201ENST00000548612 1779 ntBASIC4.46□□□□□ -1.7
CDX1P47902 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
CDX1P47902 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.46□□□□□ -1.7
CDX1P47902 RNU6-481P-201ENST00000384194 107 ntBASIC4.46□□□□□ -1.7
CDX1P47902 RNA5SP241-201ENST00000391326 114 ntBASIC4.46□□□□□ -1.7
CDX1P47902 HMGB3P18-201ENST00000406327 590 ntBASIC4.46□□□□□ -1.7
CDX1P47902 RN7SKP247-201ENST00000411094 308 ntBASIC4.46□□□□□ -1.7
CDX1P47902 RNU6-603P-201ENST00000411403 107 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC096921.1-201ENST00000411661 375 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AL445183.3-201ENST00000414168 502 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.46□□□□□ -1.7
CDX1P47902 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.46□□□□□ -1.7
CDX1P47902 BX664727.1-201ENST00000416024 466 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CDX1P47902 AL662874.1-201ENST00000426065 230 ntBASIC4.46□□□□□ -1.7
CDX1P47902 VN1R21P-201ENST00000426703 765 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC093422.3-201ENST00000428506 305 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AL121776.1-201ENST00000429337 372 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.46□□□□□ -1.7
CDX1P47902 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC4.46□□□□□ -1.7
CDX1P47902 SUMO2P3-201ENST00000438311 288 ntBASIC4.46□□□□□ -1.7
CDX1P47902 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.46□□□□□ -1.7
CDX1P47902 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.46□□□□□ -1.7
CDX1P47902 AC005297.1-201ENST00000444765 862 ntBASIC4.46□□□□□ -1.7
CDX1P47902 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.46□□□□□ -1.7
CDX1P47902 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CDX1P47902 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.46□□□□□ -1.7
CDX1P47902 AL591473.1-201ENST00000464297 313 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC022795.1-201ENST00000473808 480 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC087672.1-201ENST00000479876 766 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC006539.1-201ENST00000481419 501 ntBASIC4.46□□□□□ -1.7
CDX1P47902 RPS3AP15-201ENST00000483874 781 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC009120.1-201ENST00000493458 473 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC016559.2-201ENST00000510759 359 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC074087.1-201ENST00000512059 724 ntBASIC4.46□□□□□ -1.7
CDX1P47902 RNA5SP464-201ENST00000516251 108 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC139365.2-201ENST00000517972 253 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.46□□□□□ -1.7
CDX1P47902 AC090424.1-201ENST00000535243 736 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC4.46□□□□□ -1.7
CDX1P47902 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC4.46□□□□□ -1.7
CDX1P47902 OR11H3P-201ENST00000554547 982 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AL121594.4-201ENST00000556211 1196 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AL049872.1-201ENST00000556323 322 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC096996.1-201ENST00000563813 325 ntBASIC4.46□□□□□ -1.7
CDX1P47902 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC4.46□□□□□ -1.7
CDX1P47902 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC4.46□□□□□ -1.7
CDX1P47902 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.46□□□□□ -1.7
CDX1P47902 FO393422.1-201ENST00000603908 708 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC112503.2-201ENST00000609005 552 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC018926.1-201ENST00000616335 435 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AL445528.2-201ENST00000620582 470 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AL390318.1-201ENST00000624564 687 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AC116563.2-201ENST00000624751 535 ntBASIC4.46□□□□□ -1.7
CDX1P47902 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.46□□□□□ -1.7
CDX1P47902 AC132825.7-201ENST00000638744 335 ntBASIC4.46□□□□□ -1.7
CDX1P47902 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.46□□□□□ -1.7
CDX1P47902 AL596275.2-204ENST00000641628 552 ntBASIC4.46□□□□□ -1.7
CDX1P47902 AL596275.2-206ENST00000641957 626 ntBASIC4.46□□□□□ -1.7
CDX1P47902 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC4.46□□□□□ -1.7
CDX1P47902 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
CDX1P47902 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.46□□□□□ -1.7
CDX1P47902 Z95331.1-201ENST00000623075 23112 ntBASIC4.46□□□□□ -1.7
CDX1P47902 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CDX1P47902 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
CDX1P47902 AL137100.1-201ENST00000556703 1620 ntBASIC4.46□□□□□ -1.7
CDX1P47902 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CDX1P47902 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
CDX1P47902 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC4.46□□□□□ -1.7
CDX1P47902 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.45□□□□□ -1.7
CDX1P47902 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CDX1P47902 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms