Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
BRCA1P38398 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
BRCA1P38398 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.68□□□□□ -1.5
BRCA1P38398 AL121950.1-201ENST00000624993 2077 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.68□□□□□ -1.5
BRCA1P38398 AMZ2P2-201ENST00000406819 1057 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.68□□□□□ -1.5
BRCA1P38398 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.68□□□□□ -1.5
BRCA1P38398 RN7SL558P-201ENST00000497468 299 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 AC026726.1-201ENST00000512859 601 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 AC108064.1-201ENST00000513791 460 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
BRCA1P38398 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.68□□□□□ -1.5
BRCA1P38398 SNORA74C-1-201ENST00000580726 201 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 AP003400.2-201ENST00000624036 666 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
BRCA1P38398 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.68□□□□□ -1.5
BRCA1P38398 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
BRCA1P38398 MAPK10-372ENST00000641954 3413 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
BRCA1P38398 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.67□□□□□ -1.5
BRCA1P38398 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRCA1P38398 DMD-202ENST00000343523 5623 ntTSL 5 BASIC5.67□□□□□ -1.5
BRCA1P38398 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRCA1P38398 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.67□□□□□ -1.5
BRCA1P38398 ATP5F1P3-201ENST00000397213 657 ntBASIC5.67□□□□□ -1.5
BRCA1P38398 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC5.67□□□□□ -1.5
BRCA1P38398 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.67□□□□□ -1.5
BRCA1P38398 DHFRP3-201ENST00000455595 559 ntBASIC5.67□□□□□ -1.5
BRCA1P38398 RPL7L1P8-201ENST00000469911 741 ntBASIC5.67□□□□□ -1.5
BRCA1P38398 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.67□□□□□ -1.5
BRCA1P38398 AP003730.1-201ENST00000524605 285 ntBASIC5.67□□□□□ -1.5
BRCA1P38398 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.67□□□□□ -1.5
BRCA1P38398 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC5.67□□□□□ -1.5
BRCA1P38398 AC025857.2-201ENST00000602711 238 ntBASIC5.67□□□□□ -1.5
BRCA1P38398 AP005019.3-201ENST00000620418 560 ntBASIC5.67□□□□□ -1.5
BRCA1P38398 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
BRCA1P38398 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
BRCA1P38398 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
BRCA1P38398 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
BRCA1P38398 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.67□□□□□ -1.5
BRCA1P38398 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
BRCA1P38398 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRCA1P38398 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRCA1P38398 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
BRCA1P38398 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
BRCA1P38398 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.5
BRCA1P38398 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.66□□□□□ -1.5
BRCA1P38398 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
BRCA1P38398 OR1L6-202ENST00000373684 1044 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.66□□□□□ -1.5
BRCA1P38398 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
BRCA1P38398 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.66□□□□□ -1.5
BRCA1P38398 AC011998.1-201ENST00000433403 117 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.66□□□□□ -1.5
BRCA1P38398 AC091959.2-201ENST00000477363 321 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 F11-205ENST00000492972 1204 ntTSL 2 BASIC5.66□□□□□ -1.5
BRCA1P38398 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.66□□□□□ -1.5
BRCA1P38398 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.66□□□□□ -1.5
BRCA1P38398 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
BRCA1P38398 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.66□□□□□ -1.5
BRCA1P38398 AC090181.2-201ENST00000602975 672 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
BRCA1P38398 AL731532.1-201ENST00000623972 4236 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
BRCA1P38398 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
BRCA1P38398 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.66□□□□□ -1.5
BRCA1P38398 AL158163.1-201ENST00000603915 1649 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
BRCA1P38398 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
BRCA1P38398 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.66□□□□□ -1.5
BRCA1P38398 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
BRCA1P38398 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
BRCA1P38398 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
BRCA1P38398 SNORA63.1-201ENST00000362493 131 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
BRCA1P38398 AL672167.2-201ENST00000377164 879 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 RN7SKP33-201ENST00000410942 340 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 NPM1P36-201ENST00000415681 835 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 AC006326.1-201ENST00000445465 787 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.66□□□□□ -1.5
BRCA1P38398 RPL23AP2-201ENST00000471227 466 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 AC136777.2-201ENST00000522979 358 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.66□□□□□ -1.5
BRCA1P38398 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.66□□□□□ -1.5
BRCA1P38398 CDRT1-208ENST00000630868 794 ntBASIC5.66□□□□□ -1.5
BRCA1P38398 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
BRCA1P38398 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.66□□□□□ -1.5
BRCA1P38398 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
BRCA1P38398 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
BRCA1P38398 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
BRCA1P38398 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
BRCA1P38398 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
BRCA1P38398 SNORA70.6-201ENST00000383934 134 ntBASIC5.65□□□□□ -1.5
BRCA1P38398 AL590762.2-201ENST00000395798 571 ntBASIC5.65□□□□□ -1.5
BRCA1P38398 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.65□□□□□ -1.5
BRCA1P38398 AL451139.1-201ENST00000434718 346 ntBASIC5.65□□□□□ -1.5
BRCA1P38398 AC053481.1-201ENST00000467217 306 ntBASIC5.65□□□□□ -1.5
BRCA1P38398 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.65□□□□□ -1.5
BRCA1P38398 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms