Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 AC011447.7-201ENST00000624228 1590 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 THAP12P4-201ENST00000528321 2266 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD13P35453 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD13P35453 TAF9BP2-201ENST00000400856 499 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.52□□□□□ -1.53
HOXD13P35453 LSM5-206ENST00000409987 504 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD13P35453 USP9YP19-201ENST00000412165 485 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 AC105402.1-201ENST00000413336 545 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 BMS1P13-201ENST00000417301 885 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.52□□□□□ -1.53
HOXD13P35453 DDX39BP1-205ENST00000422507 192 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 MTND2P11-201ENST00000423638 648 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXD13P35453 BTF3P6-201ENST00000448054 499 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXD13P35453 AC004815.1-201ENST00000484185 331 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 MRPS33P2-201ENST00000507850 322 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD13P35453 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXD13P35453 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXD13P35453 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD13P35453 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXD13P35453 AC068993.1-201ENST00000546724 589 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 LSM3P2-201ENST00000551246 273 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.52□□□□□ -1.53
HOXD13P35453 AC116553.2-201ENST00000564203 463 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 AC127024.5-201ENST00000580085 462 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 AC025175.1-201ENST00000606482 759 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 AC011472.4-201ENST00000615848 491 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 MIR1264-201ENST00000616374 69 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD13P35453 AP003497.2-201ENST00000624220 967 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD13P35453 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD13P35453 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
HOXD13P35453 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
HOXD13P35453 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD13P35453 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXD13P35453 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD13P35453 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
HOXD13P35453 AC063976.2-201ENST00000425667 3556 ntBASIC5.52□□□□□ -1.53
HOXD13P35453 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD13P35453 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXD13P35453 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
HOXD13P35453 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD13P35453 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD13P35453 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXD13P35453 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD13P35453 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD13P35453 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
HOXD13P35453 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD13P35453 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
HOXD13P35453 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
HOXD13P35453 MIR323B-201ENST00000385269 82 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 MIR765-201ENST00000390226 114 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD13P35453 PCNPP4-201ENST00000414817 517 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 DPY19L1P2-201ENST00000426647 915 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 AC073508.1-201ENST00000428866 656 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD13P35453 RPL17P35-201ENST00000432217 549 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 AC074367.1-201ENST00000438685 1125 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD13P35453 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXD13P35453 NPM1P39-201ENST00000449818 867 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 RNU7-27P-201ENST00000459281 62 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC110775.1-201ENST00000513721 462 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXD13P35453 RN7SKP141-201ENST00000516167 338 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 SNORA26.10-201ENST00000516427 141 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC022832.1-201ENST00000530718 645 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD13P35453 AC125612.1-201ENST00000547580 377 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXD13P35453 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD13P35453 OR7E18P-201ENST00000592589 702 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 AL445222.1-201ENST00000607259 628 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXD13P35453 AC090617.9-201ENST00000623751 147 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 AC100778.3-201ENST00000580060 1750 ntBASIC5.51□□□□□ -1.53
HOXD13P35453 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXD13P35453 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD13P35453 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXD13P35453 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
HOXD13P35453 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.5□□□□□ -1.53
HOXD13P35453 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXD13P35453 RNA5SP428-201ENST00000365129 132 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms