Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC234771.2-201ENST00000445718 597 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC6.38□□□□□ -1.39
COL8A1P27658 Y_RNA.635-201ENST00000459041 101 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 UOX-201ENST00000471089 899 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AC117395.3-201ENST00000471176 680 ntTSL 4 BASIC6.38□□□□□ -1.39
COL8A1P27658 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 RN7SL214P-201ENST00000487317 265 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 FTH1P23-201ENST00000492727 550 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AC025164.1-201ENST00000496249 478 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC024451.1-201ENST00000508013 779 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 RPL7L1P4-201ENST00000513004 707 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 MTND5P4-201ENST00000514978 288 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.38□□□□□ -1.39
COL8A1P27658 RN7SKP295-201ENST00000517264 153 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC116348.2-201ENST00000563751 577 ntTSL 4 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.38□□□□□ -1.39
COL8A1P27658 STX8-209ENST00000574431 731 ntTSL 3 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC012368.3-201ENST00000604190 219 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 PRR13P7-201ENST00000605538 430 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AL096855.2-201ENST00000605785 369 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 RN7SL715P-201ENST00000606972 286 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AL022345.1-201ENST00000607292 135 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AC008626.2-201ENST00000624425 248 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 SNX18P12-201ENST00000624821 759 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC063952.1-203ENST00000634410 658 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AC099654.6-201ENST00000636487 512 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
COL8A1P27658 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL8A1P27658 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 SLC3A1-204ENST00000409380 2424 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 LINC01060-204ENST00000510832 2435 ntTSL 2 BASIC6.38□□□□□ -1.39
COL8A1P27658 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC6.38□□□□□ -1.39
COL8A1P27658 AL133467.3-203ENST00000461160 3574 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 RASGRP3-202ENST00000403687 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 MMP25-AS1-206ENST00000573130 4434 ntTSL 2 BASIC6.37□□□□□ -1.39
COL8A1P27658 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 RTL3-201ENST00000321110 2648 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
COL8A1P27658 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
COL8A1P27658 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 AC009948.3-201ENST00000603415 1798 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AC008627.1-201ENST00000517511 1704 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 ZNF101-208ENST00000592502 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 OR5BR1P-201ENST00000524992 1330 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 GNG5P1-201ENST00000255500 204 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 OR1S2-201ENST00000302592 978 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 Y_RNA.117-201ENST00000363294 101 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 SNORA70.8-201ENST00000384231 136 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
COL8A1P27658 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 MTCYBP4-201ENST00000401524 249 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 RN7SKP129-201ENST00000410288 299 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 RN7SKP86-201ENST00000410454 332 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 MTATP6P18-201ENST00000417994 673 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 RPS26P13-201ENST00000419030 330 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 RPS7P14-201ENST00000426405 583 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC6.37□□□□□ -1.39
COL8A1P27658 RPS27AP6-201ENST00000427962 448 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AL669831.1-202ENST00000428504 417 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 BMS1P19-201ENST00000433925 393 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC6.37□□□□□ -1.39
COL8A1P27658 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 HMGN1P2-201ENST00000445197 310 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AL157827.1-201ENST00000447622 132 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AC112206.1-201ENST00000468416 477 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 VN1R17P-201ENST00000472048 1090 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 TRBV1-201ENST00000476502 284 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC6.37□□□□□ -1.39
COL8A1P27658 PCBP2P3-201ENST00000509726 843 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 PSD2-AS1-201ENST00000515306 412 ntTSL 3 BASIC6.37□□□□□ -1.39
COL8A1P27658 Y_RNA.668-201ENST00000516233 93 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 SNORA40.12-201ENST00000516329 111 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC6.37□□□□□ -1.39
COL8A1P27658 AC109635.4-202ENST00000531666 412 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 OR5D15P-201ENST00000531671 942 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 OR5F2P-201ENST00000532761 941 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC6.37□□□□□ -1.39
COL8A1P27658 AC068587.4-201ENST00000533893 186 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms