Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SDC1P18827 RNU1-83P-201ENST00000363426 164 ntBASIC4.6□□□□□ -1.67
SDC1P18827 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDC1P18827 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SDC1P18827 OR13C3-201ENST00000374781 1108 ntBASIC4.6□□□□□ -1.67
SDC1P18827 ARL4AP5-201ENST00000404372 599 ntBASIC4.6□□□□□ -1.67
SDC1P18827 AC013470.3-201ENST00000420252 1194 ntBASIC4.6□□□□□ -1.67
SDC1P18827 NPM1P22-201ENST00000427761 952 ntBASIC4.6□□□□□ -1.67
SDC1P18827 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SDC1P18827 NDUFA5P1-201ENST00000433858 341 ntBASIC4.6□□□□□ -1.67
SDC1P18827 AL451139.1-201ENST00000434718 346 ntBASIC4.6□□□□□ -1.67
SDC1P18827 RPL7P11-201ENST00000437586 658 ntBASIC4.6□□□□□ -1.67
SDC1P18827 TDGF1P1-201ENST00000445734 527 ntBASIC4.6□□□□□ -1.67
SDC1P18827 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.6□□□□□ -1.67
SDC1P18827 RPL23AP56-201ENST00000460778 453 ntBASIC4.6□□□□□ -1.67
SDC1P18827 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 RPS26P39-201ENST00000469206 341 ntBASIC4.6□□□□□ -1.67
SDC1P18827 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 OR11I1P-201ENST00000486033 954 ntBASIC4.6□□□□□ -1.67
SDC1P18827 OR9N1P-201ENST00000491296 333 ntBASIC4.6□□□□□ -1.67
SDC1P18827 PANCR-201ENST00000503456 493 ntTSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.6□□□□□ -1.67
SDC1P18827 AK4P6-201ENST00000505168 528 ntBASIC4.6□□□□□ -1.67
SDC1P18827 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.6□□□□□ -1.67
SDC1P18827 RN7SKP34-201ENST00000516142 244 ntBASIC4.6□□□□□ -1.67
SDC1P18827 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.6□□□□□ -1.67
SDC1P18827 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.6□□□□□ -1.67
SDC1P18827 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.6□□□□□ -1.67
SDC1P18827 AC093249.4-201ENST00000564755 259 ntBASIC4.6□□□□□ -1.67
SDC1P18827 MIR3691-201ENST00000578066 90 ntBASIC4.6□□□□□ -1.67
SDC1P18827 BX322635.1-201ENST00000605804 496 ntBASIC4.6□□□□□ -1.67
SDC1P18827 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SDC1P18827 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDC1P18827 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDC1P18827 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDC1P18827 SMG1P6-201ENST00000532337 2930 ntBASIC4.6□□□□□ -1.67
SDC1P18827 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDC1P18827 AL590763.1-201ENST00000398297 1545 ntBASIC4.6□□□□□ -1.67
SDC1P18827 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.6□□□□□ -1.67
SDC1P18827 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SDC1P18827 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
SDC1P18827 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.59□□□□□ -1.67
SDC1P18827 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SDC1P18827 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
SDC1P18827 U8.4-201ENST00000363626 134 ntBASIC4.59□□□□□ -1.67
SDC1P18827 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SDC1P18827 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SDC1P18827 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.59□□□□□ -1.67
SDC1P18827 AP002530.1-201ENST00000405705 684 ntBASIC4.59□□□□□ -1.67
SDC1P18827 RN7SKP125-201ENST00000410481 302 ntBASIC4.59□□□□□ -1.67
SDC1P18827 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.59□□□□□ -1.67
SDC1P18827 AL445487.1-201ENST00000415694 1580 ntBASIC4.59□□□□□ -1.67
SDC1P18827 AC234781.4-201ENST00000419384 244 ntBASIC4.59□□□□□ -1.67
SDC1P18827 PTP4A1P1-201ENST00000420539 515 ntBASIC4.59□□□□□ -1.67
SDC1P18827 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.59□□□□□ -1.67
SDC1P18827 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC4.59□□□□□ -1.67
SDC1P18827 AC099654.2-201ENST00000433031 1980 ntBASIC4.59□□□□□ -1.67
SDC1P18827 RPS17P8-201ENST00000434525 335 ntBASIC4.59□□□□□ -1.67
SDC1P18827 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.59□□□□□ -1.67
SDC1P18827 NPM1P33-201ENST00000438918 872 ntBASIC4.59□□□□□ -1.67
SDC1P18827 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.59□□□□□ -1.67
SDC1P18827 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.59□□□□□ -1.67
SDC1P18827 RN7SL346P-201ENST00000491561 294 ntBASIC4.59□□□□□ -1.67
SDC1P18827 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.59□□□□□ -1.67
SDC1P18827 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.59□□□□□ -1.67
SDC1P18827 RNU6-362P-201ENST00000516736 90 ntBASIC4.59□□□□□ -1.67
SDC1P18827 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.59□□□□□ -1.67
SDC1P18827 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SDC1P18827 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.59□□□□□ -1.67
SDC1P18827 FKBP1BP1-201ENST00000553366 325 ntBASIC4.59□□□□□ -1.67
SDC1P18827 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.59□□□□□ -1.67
SDC1P18827 AC097461.1-201ENST00000568928 2821 ntBASIC4.59□□□□□ -1.67
SDC1P18827 AL121932.1-201ENST00000605542 214 ntBASIC4.59□□□□□ -1.67
SDC1P18827 AC012213.4-201ENST00000606457 354 ntBASIC4.59□□□□□ -1.67
SDC1P18827 AC100814.1-201ENST00000606963 623 ntBASIC4.59□□□□□ -1.67
SDC1P18827 AL592494.3-201ENST00000609485 464 ntBASIC4.59□□□□□ -1.67
SDC1P18827 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.59□□□□□ -1.67
SDC1P18827 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SDC1P18827 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SDC1P18827 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SDC1P18827 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SDC1P18827 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
SDC1P18827 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SDC1P18827 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SDC1P18827 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.59□□□□□ -1.68
SDC1P18827 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SDC1P18827 TLK1P1-201ENST00000456760 2440 ntBASIC4.58□□□□□ -1.68
SDC1P18827 AC021242.1-201ENST00000507315 2035 ntBASIC4.58□□□□□ -1.68
SDC1P18827 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
SDC1P18827 SAMMSON-213ENST00000641336 1521 ntBASIC4.58□□□□□ -1.68
SDC1P18827 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.58□□□□□ -1.68
SDC1P18827 BRAFP1-201ENST00000445336 2703 ntBASIC4.58□□□□□ -1.68
SDC1P18827 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.58□□□□□ -1.68
SDC1P18827 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.58□□□□□ -1.68
SDC1P18827 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms