Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 IGHV3-63-201ENST00000518422 341 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
COL6A1P12109 AC105233.3-201ENST00000531125 744 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 AP000916.1-201ENST00000533869 835 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC6.41□□□□□ -1.38
COL6A1P12109 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC6.41□□□□□ -1.38
COL6A1P12109 MIR3691-201ENST00000578066 90 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC6.41□□□□□ -1.38
COL6A1P12109 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC6.41□□□□□ -1.38
COL6A1P12109 AC080078.2-201ENST00000603766 501 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 uc_338.26-201ENST00000612659 160 ntBASIC6.41□□□□□ -1.38
COL6A1P12109 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.41□□□□□ -1.38
COL6A1P12109 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC6.41□□□□□ -1.38
COL6A1P12109 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.41□□□□□ -1.38
COL6A1P12109 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.41□□□□□ -1.38
COL6A1P12109 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.41□□□□□ -1.38
COL6A1P12109 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.41□□□□□ -1.38
COL6A1P12109 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL6A1P12109 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL6A1P12109 ZNF90P1-201ENST00000480493 1951 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL6A1P12109 AL359715.3-201ENST00000569267 2123 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.4□□□□□ -1.38
COL6A1P12109 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL6A1P12109 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.4□□□□□ -1.38
COL6A1P12109 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL6A1P12109 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL6A1P12109 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.4□□□□□ -1.38
COL6A1P12109 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.4□□□□□ -1.38
COL6A1P12109 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.4□□□□□ -1.38
COL6A1P12109 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
COL6A1P12109 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
COL6A1P12109 RNU5A-2P-201ENST00000384337 116 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 RNU1-106P-201ENST00000384382 164 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AL355379.1-201ENST00000405542 640 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 OR2W4P-201ENST00000406496 926 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 RN7SKP151-201ENST00000410230 316 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AL390774.1-201ENST00000411924 246 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC008173.1-201ENST00000418901 264 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 RPS3AP37-201ENST00000419176 745 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC007562.1-201ENST00000421819 517 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC006065.1-201ENST00000422539 802 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC021876.1-201ENST00000425959 359 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC6.4□□□□□ -1.38
COL6A1P12109 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.4□□□□□ -1.38
COL6A1P12109 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC6.4□□□□□ -1.38
COL6A1P12109 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC6.4□□□□□ -1.38
COL6A1P12109 GTF2IP3-201ENST00000433887 494 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC6.4□□□□□ -1.38
COL6A1P12109 AC118469.1-201ENST00000442943 488 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC6.4□□□□□ -1.38
COL6A1P12109 AC016772.1-201ENST00000444170 1261 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC6.4□□□□□ -1.38
COL6A1P12109 AC023274.2-201ENST00000445264 521 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL6A1P12109 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC6.4□□□□□ -1.38
COL6A1P12109 AC008280.2-201ENST00000455473 307 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 RPL5P13-201ENST00000462840 709 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 RN7SL165P-201ENST00000477476 291 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC6.4□□□□□ -1.38
COL6A1P12109 AC107401.1-201ENST00000503426 685 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.4□□□□□ -1.38
COL6A1P12109 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC6.4□□□□□ -1.38
COL6A1P12109 MTCYBP16-201ENST00000509187 1129 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AF213884.2-201ENST00000510417 903 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC117532.1-201ENST00000514638 323 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 MTHFD2P4-201ENST00000515074 1025 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AP003080.1-202ENST00000526526 915 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC6.4□□□□□ -1.38
COL6A1P12109 AC027667.1-201ENST00000545814 304 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 CR383656.6-201ENST00000550518 394 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC023161.2-201ENST00000551218 780 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.4□□□□□ -1.38
COL6A1P12109 MRPS21P7-201ENST00000566937 238 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC103987.3-201ENST00000582071 292 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC6.4□□□□□ -1.38
COL6A1P12109 AC067852.5-201ENST00000589299 310 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 DEFB131E-202ENST00000602581 683 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC012557.1-201ENST00000607115 611 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC245100.7-201ENST00000609678 442 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC100827.5-201ENST00000615883 426 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AC123767.1-202ENST00000620407 817 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 AL359715.5-201ENST00000623431 443 ntBASIC6.4□□□□□ -1.38
COL6A1P12109 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms