Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.4□□□□□ -1.7
SPTA1P02549 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SPTA1P02549 SAMMSON-210ENST00000641260 1308 ntBASIC4.4□□□□□ -1.7
SPTA1P02549 AL442639.1-201ENST00000625030 1899 ntBASIC4.4□□□□□ -1.7
SPTA1P02549 RN7SKP106-201ENST00000410832 272 ntBASIC4.4□□□□□ -1.7
SPTA1P02549 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.4□□□□□ -1.7
SPTA1P02549 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.4□□□□□ -1.7
SPTA1P02549 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.4□□□□□ -1.7
SPTA1P02549 RN7SL303P-201ENST00000469773 251 ntBASIC4.4□□□□□ -1.7
SPTA1P02549 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.7
SPTA1P02549 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.4□□□□□ -1.7
SPTA1P02549 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
SPTA1P02549 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.4□□□□□ -1.7
SPTA1P02549 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.4□□□□□ -1.7
SPTA1P02549 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.4□□□□□ -1.7
SPTA1P02549 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.4□□□□□ -1.71
SPTA1P02549 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SPTA1P02549 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
SPTA1P02549 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SPTA1P02549 AC108467.2-201ENST00000617640 1597 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SPTA1P02549 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
SPTA1P02549 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SPTA1P02549 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SPTA1P02549 MIR383-201ENST00000362257 73 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.4□□□□□ -1.71
SPTA1P02549 MIR554-201ENST00000384874 96 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.4□□□□□ -1.71
SPTA1P02549 KRR1P1-201ENST00000419430 803 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 RPS29P17-201ENST00000430795 166 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 USP24P1-201ENST00000433802 779 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 TMX2P1-201ENST00000436507 708 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 ACTR3P2-201ENST00000439585 1257 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 RPL23AP93-201ENST00000440847 484 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.4□□□□□ -1.71
SPTA1P02549 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.4□□□□□ -1.71
SPTA1P02549 ZNF415P1-201ENST00000582279 1166 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 VN1R92P-201ENST00000598511 928 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 AC004836.1-201ENST00000623032 634 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 AL356863.1-201ENST00000623378 1080 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.4□□□□□ -1.71
SPTA1P02549 AP000866.6-201ENST00000638898 3579 ntBASIC4.4□□□□□ -1.71
SPTA1P02549 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SPTA1P02549 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.39□□□□□ -1.71
SPTA1P02549 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 AC093591.2-201ENST00000565254 3843 ntBASIC4.39□□□□□ -1.71
SPTA1P02549 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.39□□□□□ -1.71
SPTA1P02549 AL136164.3-201ENST00000624429 3978 ntBASIC4.39□□□□□ -1.71
SPTA1P02549 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
SPTA1P02549 AP000547.3-204ENST00000588548 2523 ntBASIC4.39□□□□□ -1.71
SPTA1P02549 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.39□□□□□ -1.71
SPTA1P02549 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 RPL21P108-201ENST00000413857 481 ntBASIC4.39□□□□□ -1.71
SPTA1P02549 RAB9AP4-201ENST00000415230 609 ntBASIC4.39□□□□□ -1.71
SPTA1P02549 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC4.39□□□□□ -1.71
SPTA1P02549 SCAND3P1-201ENST00000439854 1060 ntBASIC4.39□□□□□ -1.71
SPTA1P02549 AC116562.1-201ENST00000485355 781 ntBASIC4.39□□□□□ -1.71
SPTA1P02549 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC4.39□□□□□ -1.71
SPTA1P02549 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.39□□□□□ -1.71
SPTA1P02549 HMGN1P9-201ENST00000515212 298 ntBASIC4.39□□□□□ -1.71
SPTA1P02549 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.39□□□□□ -1.71
SPTA1P02549 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC4.39□□□□□ -1.71
SPTA1P02549 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.39□□□□□ -1.71
SPTA1P02549 AL049794.2-201ENST00000616301 365 ntBASIC4.39□□□□□ -1.71
SPTA1P02549 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.39□□□□□ -1.71
SPTA1P02549 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.39□□□□□ -1.71
SPTA1P02549 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.39□□□□□ -1.71
SPTA1P02549 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.39□□□□□ -1.71
SPTA1P02549 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SPTA1P02549 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SPTA1P02549 RNA5SP119-201ENST00000362715 117 ntBASIC4.38□□□□□ -1.71
SPTA1P02549 AC008171.1-201ENST00000395058 200 ntBASIC4.38□□□□□ -1.71
SPTA1P02549 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.38□□□□□ -1.71
SPTA1P02549 AL691482.1-201ENST00000453255 87 ntBASIC4.38□□□□□ -1.71
SPTA1P02549 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC4.38□□□□□ -1.71
SPTA1P02549 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.38□□□□□ -1.71
SPTA1P02549 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.38□□□□□ -1.71
SPTA1P02549 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.38□□□□□ -1.71
SPTA1P02549 AC114781.5-201ENST00000615297 108 ntBASIC4.38□□□□□ -1.71
SPTA1P02549 uc_338.7-201ENST00000621834 124 ntBASIC4.38□□□□□ -1.71
SPTA1P02549 AC007342.8-201ENST00000623278 678 ntBASIC4.38□□□□□ -1.71
SPTA1P02549 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
SPTA1P02549 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC4.38□□□□□ -1.71
SPTA1P02549 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.38□□□□□ -1.71
SPTA1P02549 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SPTA1P02549 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.38□□□□□ -1.71
SPTA1P02549 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
SPTA1P02549 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
SPTA1P02549 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.38□□□□□ -1.71
SPTA1P02549 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
SPTA1P02549 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms