Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 RNU6-249P-201ENST00000363016 102 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 RNU1-32P-201ENST00000363937 159 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 SNORA62-201ENST00000365493 153 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 SNORA2.3-201ENST00000383920 135 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC002524.1-201ENST00000411687 547 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 OR13Z1P-201ENST00000416141 834 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 COX6CP17-201ENST00000421389 185 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AL359265.2-201ENST00000434367 631 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 NOP56P2-201ENST00000447491 769 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 TPT1P12-201ENST00000448968 492 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 IGHV5-78-201ENST00000450948 295 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 BX842559.2-201ENST00000451418 605 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC091180.1-201ENST00000462104 372 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC091544.1-201ENST00000484702 348 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 OR7H2P-201ENST00000513483 306 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 OR10D4P-201ENST00000525892 951 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 GCSHP4-201ENST00000538792 439 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AL133406.3-201ENST00000606817 541 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 BX005214.3-202ENST00000619809 325 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 AP000648.2-201ENST00000624182 404 ntBASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TMX2-CTNND1H3BSU7 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AP000542.2-201ENST00000623199 6179 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 SETP15-201ENST00000412724 337 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AF186996.5-201ENST00000418098 904 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 COX6CP13-201ENST00000428703 226 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC096741.1-201ENST00000472250 846 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 RN7SL814P-201ENST00000487715 300 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 SETP1-201ENST00000556014 845 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 DPRXP4-201ENST00000578053 568 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AC005377.1-201ENST00000605126 456 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 MIR378J-201ENST00000611988 109 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 MTCO1P46-201ENST00000451639 1491 ntBASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
TMX2-CTNND1H3BSU7 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
TMX2-CTNND1H3BSU7 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
TMX2-CTNND1H3BSU7 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
TMX2-CTNND1H3BSU7 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 147.5 ms