Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 KSR1P1-201ENST00000446298 240 ntBASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 CR392000.1-201ENST00000624770 1228 ntBASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX9Q9Y5X1 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SNX9Q9Y5X1 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SNX9Q9Y5X1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SNX9Q9Y5X1 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SNX9Q9Y5X1 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.89■□□□□ 0.94
SNX9Q9Y5X1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX9Q9Y5X1 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX9Q9Y5X1 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 MIR4785-201ENST00000585005 73 ntBASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 KRT16P1-201ENST00000399124 1418 ntBASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX9Q9Y5X1 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 KRT17P2-201ENST00000300992 1314 ntBASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 AC026471.5-201ENST00000615068 467 ntBASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 AL445675.2-201ENST00000620291 557 ntBASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms