Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
NOD1Q9Y239 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NOD1Q9Y239 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NOD1Q9Y239 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NOD1Q9Y239 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NOD1Q9Y239 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
NOD1Q9Y239 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.51■■□□□ 1.03
NOD1Q9Y239 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.51■■□□□ 1.03
NOD1Q9Y239 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC21.51■■□□□ 1.03
NOD1Q9Y239 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.51■■□□□ 1.03
NOD1Q9Y239 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NOD1Q9Y239 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
NOD1Q9Y239 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.51■■□□□ 1.03
NOD1Q9Y239 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NOD1Q9Y239 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
NOD1Q9Y239 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.51■■□□□ 1.03
NOD1Q9Y239 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
NOD1Q9Y239 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NOD1Q9Y239 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.51■■□□□ 1.03
NOD1Q9Y239 AC026310.3-201ENST00000625186 2373 ntBASIC21.51■■□□□ 1.03
NOD1Q9Y239 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.5■■□□□ 1.03
NOD1Q9Y239 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.5■■□□□ 1.03
NOD1Q9Y239 FAM8A6P-201ENST00000407496 1135 ntBASIC21.5■■□□□ 1.03
NOD1Q9Y239 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 TSPY5P-201ENST00000426936 936 ntBASIC21.5■■□□□ 1.03
NOD1Q9Y239 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.5■■□□□ 1.03
NOD1Q9Y239 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 TSPY17P-201ENST00000450329 467 ntBASIC21.5■■□□□ 1.03
NOD1Q9Y239 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 Z85996.1-201ENST00000494644 937 ntBASIC21.5■■□□□ 1.03
NOD1Q9Y239 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.5■■□□□ 1.03
NOD1Q9Y239 AL512604.3-201ENST00000569583 964 ntBASIC21.5■■□□□ 1.03
NOD1Q9Y239 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.5■■□□□ 1.03
NOD1Q9Y239 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.5■■□□□ 1.03
NOD1Q9Y239 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.5■■□□□ 1.03
NOD1Q9Y239 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
NOD1Q9Y239 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOD1Q9Y239 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
NOD1Q9Y239 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NOD1Q9Y239 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
NOD1Q9Y239 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NOD1Q9Y239 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NOD1Q9Y239 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.49■■□□□ 1.03
NOD1Q9Y239 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.49■■□□□ 1.03
NOD1Q9Y239 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NOD1Q9Y239 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
NOD1Q9Y239 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
NOD1Q9Y239 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
NOD1Q9Y239 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.49■■□□□ 1.03
NOD1Q9Y239 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.48■■□□□ 1.03
NOD1Q9Y239 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.48■■□□□ 1.03
NOD1Q9Y239 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NOD1Q9Y239 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.48■■□□□ 1.03
NOD1Q9Y239 AC092338.2-201ENST00000568827 1415 ntBASIC21.48■■□□□ 1.03
NOD1Q9Y239 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NOD1Q9Y239 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NOD1Q9Y239 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
NOD1Q9Y239 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NOD1Q9Y239 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21.48■■□□□ 1.03
NOD1Q9Y239 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC21.48■■□□□ 1.03
NOD1Q9Y239 AL160286.2-201ENST00000567150 934 ntBASIC21.48■■□□□ 1.03
NOD1Q9Y239 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.48■■□□□ 1.03
NOD1Q9Y239 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.48■■□□□ 1.03
NOD1Q9Y239 AC141257.4-201ENST00000634557 245 ntBASIC21.48■■□□□ 1.03
NOD1Q9Y239 AC136944.6-201ENST00000634818 245 ntBASIC21.48■■□□□ 1.03
NOD1Q9Y239 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.48■■□□□ 1.03
NOD1Q9Y239 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NOD1Q9Y239 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NOD1Q9Y239 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
NOD1Q9Y239 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NOD1Q9Y239 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.48■■□□□ 1.03
NOD1Q9Y239 LINC00565-201ENST00000562710 2331 ntBASIC21.47■■□□□ 1.03
NOD1Q9Y239 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.47■■□□□ 1.03
NOD1Q9Y239 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.47■■□□□ 1.03
NOD1Q9Y239 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.47■■□□□ 1.03
NOD1Q9Y239 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.47■■□□□ 1.03
NOD1Q9Y239 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.47■■□□□ 1.03
NOD1Q9Y239 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
NOD1Q9Y239 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
NOD1Q9Y239 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
NOD1Q9Y239 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms