Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC37.14■■■■□ 3.54
SHROOM4Q9ULL8 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC37.14■■■■□ 3.54
SHROOM4Q9ULL8 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC37.14■■■■□ 3.54
SHROOM4Q9ULL8 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC37.14■■■■□ 3.54
SHROOM4Q9ULL8 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC37.14■■■■□ 3.54
SHROOM4Q9ULL8 KRT16P6-202ENST00000425692 1426 ntBASIC37.14■■■■□ 3.54
SHROOM4Q9ULL8 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC37.14■■■■□ 3.54
SHROOM4Q9ULL8 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC37.13■■■■□ 3.54
SHROOM4Q9ULL8 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC37.13■■■■□ 3.54
SHROOM4Q9ULL8 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC37.13■■■■□ 3.54
SHROOM4Q9ULL8 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC37.13■■■■□ 3.53
SHROOM4Q9ULL8 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC37.13■■■■□ 3.53
SHROOM4Q9ULL8 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC37.13■■■■□ 3.53
SHROOM4Q9ULL8 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC37.13■■■■□ 3.53
SHROOM4Q9ULL8 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC37.13■■■■□ 3.53
SHROOM4Q9ULL8 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC37.13■■■■□ 3.53
SHROOM4Q9ULL8 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC37.13■■■■□ 3.53
SHROOM4Q9ULL8 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC37.13■■■■□ 3.53
SHROOM4Q9ULL8 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC37.12■■■■□ 3.53
SHROOM4Q9ULL8 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC37.12■■■■□ 3.53
SHROOM4Q9ULL8 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC37.12■■■■□ 3.53
SHROOM4Q9ULL8 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC37.12■■■■□ 3.53
SHROOM4Q9ULL8 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC37.12■■■■□ 3.53
SHROOM4Q9ULL8 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC37.12■■■■□ 3.53
SHROOM4Q9ULL8 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC37.11■■■■□ 3.53
SHROOM4Q9ULL8 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC37.11■■■■□ 3.53
SHROOM4Q9ULL8 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC37.11■■■■□ 3.53
SHROOM4Q9ULL8 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC37.11■■■■□ 3.53
SHROOM4Q9ULL8 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC37.11■■■■□ 3.53
SHROOM4Q9ULL8 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC37.11■■■■□ 3.53
SHROOM4Q9ULL8 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 BX119927.1-201ENST00000636596 1552 ntBASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 HIST1H2APS4-201ENST00000362070 348 ntBASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 AC083849.1-201ENST00000615227 514 ntBASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 AC130371.2-201ENST00000619443 611 ntBASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 GOLGA6L3-201ENST00000507199 1679 ntBASIC37.1■■■■□ 3.53
SHROOM4Q9ULL8 AC092338.2-201ENST00000568827 1415 ntBASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 AC007663.1-201ENST00000438948 1240 ntBASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 YBX1P10-201ENST00000444752 975 ntBASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 FDX2-206ENST00000492239 773 ntTSL 2 BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC37.09■■■■□ 3.53
SHROOM4Q9ULL8 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 ATP5G2P1-201ENST00000433580 426 ntBASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 GXYLT1P6-201ENST00000456472 1187 ntBASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 RCC2P6-201ENST00000526625 1557 ntBASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC37.08■■■■□ 3.53
SHROOM4Q9ULL8 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC37.07■■■■□ 3.53
SHROOM4Q9ULL8 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC37.07■■■■□ 3.53
SHROOM4Q9ULL8 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC37.07■■■■□ 3.53
SHROOM4Q9ULL8 PVRIG2P-201ENST00000435460 978 ntBASIC37.07■■■■□ 3.53
SHROOM4Q9ULL8 KRT18P16-201ENST00000510337 1294 ntBASIC37.07■■■■□ 3.53
SHROOM4Q9ULL8 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC37.07■■■■□ 3.53
SHROOM4Q9ULL8 AC023511.2-201ENST00000618803 211 ntBASIC37.07■■■■□ 3.53
SHROOM4Q9ULL8 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC37.07■■■■□ 3.53
SHROOM4Q9ULL8 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC37.07■■■■□ 3.53
SHROOM4Q9ULL8 AL391422.3-201ENST00000603791 2761 ntBASIC37.07■■■■□ 3.52
SHROOM4Q9ULL8 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC37.07■■■■□ 3.52
SHROOM4Q9ULL8 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC37.07■■■■□ 3.52
SHROOM4Q9ULL8 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC37.07■■■■□ 3.52
SHROOM4Q9ULL8 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC37.07■■■■□ 3.52
SHROOM4Q9ULL8 CD70-202ENST00000423145 881 ntTSL 2 BASIC37.07■■■■□ 3.52
SHROOM4Q9ULL8 AC246785.2-201ENST00000432512 513 ntBASIC37.07■■■■□ 3.52
SHROOM4Q9ULL8 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC37.07■■■■□ 3.52
SHROOM4Q9ULL8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC37.07■■■■□ 3.52
SHROOM4Q9ULL8 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC37.06■■■■□ 3.52
SHROOM4Q9ULL8 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC37.06■■■■□ 3.52
SHROOM4Q9ULL8 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
SHROOM4Q9ULL8 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
SHROOM4Q9ULL8 DET1-207ENST00000564406 2315 ntTSL 2 BASIC37.05■■■■□ 3.52
SHROOM4Q9ULL8 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC37.05■■■■□ 3.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms