Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 AL591742.1-201ENST00000604433 565 ntBASIC17.81■□□□□ 0.44
DDX28Q9NUL7 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 WWOX-218ENST00000627394 894 ntTSL 5 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 AC013268.1-206ENST00000638368 961 ntBASIC17.81■□□□□ 0.44
DDX28Q9NUL7 AC112229.1-201ENST00000639295 961 ntBASIC17.81■□□□□ 0.44
DDX28Q9NUL7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.81■□□□□ 0.44
DDX28Q9NUL7 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 AC137761.2-201ENST00000561729 223 ntBASIC17.8■□□□□ 0.44
DDX28Q9NUL7 AC145350.3-201ENST00000569033 163 ntBASIC17.8■□□□□ 0.44
DDX28Q9NUL7 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
DDX28Q9NUL7 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 SPI1-203ENST00000533030 661 ntTSL 2 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DDX28Q9NUL7 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 AC093503.3-201ENST00000624917 2352 ntBASIC17.78■□□□□ 0.44
DDX28Q9NUL7 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 MFSD11-216ENST00000590393 1141 ntBASIC17.78■□□□□ 0.44
DDX28Q9NUL7 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 AC020916.1-201ENST00000587762 1774 ntBASIC17.78■□□□□ 0.44
DDX28Q9NUL7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms