Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SPENQ96T58 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.65■□□□□ 0.42
SPENQ96T58 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SPENQ96T58 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SPENQ96T58 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.65■□□□□ 0.42
SPENQ96T58 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.65■□□□□ 0.42
SPENQ96T58 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SPENQ96T58 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SPENQ96T58 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC17.65■□□□□ 0.42
SPENQ96T58 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SPENQ96T58 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.65■□□□□ 0.42
SPENQ96T58 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.65■□□□□ 0.42
SPENQ96T58 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.65■□□□□ 0.42
SPENQ96T58 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SPENQ96T58 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SPENQ96T58 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SPENQ96T58 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.65■□□□□ 0.42
SPENQ96T58 AC010653.2-201ENST00000623505 997 ntBASIC17.65■□□□□ 0.42
SPENQ96T58 AC012313.10-201ENST00000623509 926 ntBASIC17.65■□□□□ 0.42
SPENQ96T58 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
SPENQ96T58 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
SPENQ96T58 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
SPENQ96T58 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SPENQ96T58 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SPENQ96T58 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.42
SPENQ96T58 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
SPENQ96T58 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SPENQ96T58 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 FEM1AP1-201ENST00000431297 1995 ntBASIC17.64■□□□□ 0.41
SPENQ96T58 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.64■□□□□ 0.41
SPENQ96T58 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
SPENQ96T58 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.64■□□□□ 0.41
SPENQ96T58 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SPENQ96T58 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.64■□□□□ 0.41
SPENQ96T58 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.64■□□□□ 0.41
SPENQ96T58 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.64■□□□□ 0.41
SPENQ96T58 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.64■□□□□ 0.41
SPENQ96T58 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC17.64■□□□□ 0.41
SPENQ96T58 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.64■□□□□ 0.41
SPENQ96T58 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 ECEL1P1-201ENST00000373592 1742 ntBASIC17.64■□□□□ 0.41
SPENQ96T58 AL512408.1-201ENST00000569378 2000 ntBASIC17.64■□□□□ 0.41
SPENQ96T58 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPENQ96T58 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.63■□□□□ 0.41
SPENQ96T58 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.63■□□□□ 0.41
SPENQ96T58 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SPENQ96T58 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SPENQ96T58 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
SPENQ96T58 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.63■□□□□ 0.41
SPENQ96T58 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.63■□□□□ 0.41
SPENQ96T58 AC023511.2-201ENST00000618803 211 ntBASIC17.63■□□□□ 0.41
SPENQ96T58 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.63■□□□□ 0.41
SPENQ96T58 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.63■□□□□ 0.41
SPENQ96T58 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.63■□□□□ 0.41
SPENQ96T58 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPENQ96T58 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SPENQ96T58 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SPENQ96T58 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.62■□□□□ 0.41
SPENQ96T58 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.62■□□□□ 0.41
SPENQ96T58 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.62■□□□□ 0.41
SPENQ96T58 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SPENQ96T58 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.62■□□□□ 0.41
SPENQ96T58 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SPENQ96T58 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SPENQ96T58 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SPENQ96T58 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.62■□□□□ 0.41
SPENQ96T58 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SPENQ96T58 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.62■□□□□ 0.41
SPENQ96T58 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SPENQ96T58 AL157384.1-201ENST00000445995 2473 ntBASIC17.62■□□□□ 0.41
SPENQ96T58 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.61■□□□□ 0.41
SPENQ96T58 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.61■□□□□ 0.41
SPENQ96T58 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SPENQ96T58 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SPENQ96T58 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SPENQ96T58 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.61■□□□□ 0.41
SPENQ96T58 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SPENQ96T58 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SPENQ96T58 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SPENQ96T58 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms