Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TTC28Q96AY4 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 AC093525.10-201ENST00000625130 1569 ntBASIC19.92■□□□□ 0.78
TTC28Q96AY4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 LINC00265-3P-201ENST00000447588 903 ntBASIC19.92■□□□□ 0.78
TTC28Q96AY4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.92■□□□□ 0.78
TTC28Q96AY4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TTC28Q96AY4 AC011484.1-201ENST00000377652 1995 ntBASIC19.91■□□□□ 0.78
TTC28Q96AY4 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TTC28Q96AY4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TTC28Q96AY4 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TTC28Q96AY4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.91■□□□□ 0.78
TTC28Q96AY4 RPSAP43-201ENST00000402237 625 ntBASIC19.91■□□□□ 0.78
TTC28Q96AY4 FAM197Y8-203ENST00000450145 560 ntBASIC19.91■□□□□ 0.78
TTC28Q96AY4 KRT8P26-201ENST00000534154 1276 ntBASIC19.91■□□□□ 0.78
TTC28Q96AY4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TTC28Q96AY4 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TTC28Q96AY4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TTC28Q96AY4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.91■□□□□ 0.78
TTC28Q96AY4 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.91■□□□□ 0.78
TTC28Q96AY4 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.91■□□□□ 0.78
TTC28Q96AY4 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TTC28Q96AY4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
TTC28Q96AY4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TTC28Q96AY4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 AC148477.8-201ENST00000624298 468 ntBASIC19.9■□□□□ 0.78
TTC28Q96AY4 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TTC28Q96AY4 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 AC106730.1-201ENST00000566722 1090 ntBASIC19.9■□□□□ 0.78
TTC28Q96AY4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.9■□□□□ 0.78
TTC28Q96AY4 AC083906.6-201ENST00000641366 219 ntBASIC19.9■□□□□ 0.78
TTC28Q96AY4 AC079781.4-201ENST00000641908 219 ntBASIC19.9■□□□□ 0.78
TTC28Q96AY4 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.89■□□□□ 0.78
TTC28Q96AY4 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.89■□□□□ 0.77
TTC28Q96AY4 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.89■□□□□ 0.77
TTC28Q96AY4 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
TTC28Q96AY4 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TTC28Q96AY4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TTC28Q96AY4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TTC28Q96AY4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.89■□□□□ 0.77
TTC28Q96AY4 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TTC28Q96AY4 KRT16P6-202ENST00000425692 1426 ntBASIC19.89■□□□□ 0.77
TTC28Q96AY4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TTC28Q96AY4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
TTC28Q96AY4 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TTC28Q96AY4 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TTC28Q96AY4 CALY-203ENST00000368558 825 ntTSL 5 BASIC19.88■□□□□ 0.77
TTC28Q96AY4 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.88■□□□□ 0.77
TTC28Q96AY4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.88■□□□□ 0.77
TTC28Q96AY4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TTC28Q96AY4 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.88■□□□□ 0.77
TTC28Q96AY4 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TTC28Q96AY4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TTC28Q96AY4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TTC28Q96AY4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.88■□□□□ 0.77
TTC28Q96AY4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC19.88■□□□□ 0.77
TTC28Q96AY4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms