Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS13CQ709C8 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS13CQ709C8 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
VPS13CQ709C8 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13CQ709C8 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13CQ709C8 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13CQ709C8 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS13CQ709C8 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS13CQ709C8 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13CQ709C8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13CQ709C8 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS13CQ709C8 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13CQ709C8 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13CQ709C8 SPDYE15P-201ENST00000424157 909 ntBASIC16.32■□□□□ 0.2
VPS13CQ709C8 VENTXP5-201ENST00000523979 775 ntBASIC16.32■□□□□ 0.2
VPS13CQ709C8 RN7SL510P-201ENST00000581311 263 ntBASIC16.32■□□□□ 0.2
VPS13CQ709C8 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS13CQ709C8 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS13CQ709C8 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.32■□□□□ 0.2
VPS13CQ709C8 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VPS13CQ709C8 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13CQ709C8 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13CQ709C8 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13CQ709C8 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13CQ709C8 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13CQ709C8 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13CQ709C8 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 AP003041.3-201ENST00000527151 707 ntBASIC16.31■□□□□ 0.2
VPS13CQ709C8 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13CQ709C8 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13CQ709C8 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13CQ709C8 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13CQ709C8 ECEL1P1-201ENST00000373592 1742 ntBASIC16.31■□□□□ 0.2
VPS13CQ709C8 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13CQ709C8 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 GCSHP2-201ENST00000560971 527 ntBASIC16.31■□□□□ 0.2
VPS13CQ709C8 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS13CQ709C8 AC116562.4-202ENST00000641738 218 ntBASIC16.31■□□□□ 0.2
VPS13CQ709C8 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13CQ709C8 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 HLA-A-209ENST00000638375 975 ntBASIC16.3■□□□□ 0.2
VPS13CQ709C8 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13CQ709C8 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13CQ709C8 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 AC112907.3-201ENST00000577781 2400 ntBASIC16.3■□□□□ 0.2
VPS13CQ709C8 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13CQ709C8 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13CQ709C8 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13CQ709C8 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13CQ709C8 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13CQ709C8 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13CQ709C8 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VPS13CQ709C8 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13CQ709C8 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS13CQ709C8 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13CQ709C8 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13CQ709C8 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13CQ709C8 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13CQ709C8 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
VPS13CQ709C8 AC116351.2-201ENST00000606540 1585 ntBASIC16.29■□□□□ 0.2
VPS13CQ709C8 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS13CQ709C8 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS13CQ709C8 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS13CQ709C8 EMBP1-201ENST00000458200 901 ntBASIC16.29■□□□□ 0.2
VPS13CQ709C8 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.29■□□□□ 0.2
VPS13CQ709C8 AC012313.10-201ENST00000623509 926 ntBASIC16.29■□□□□ 0.2
VPS13CQ709C8 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13CQ709C8 AL137060.1-201ENST00000618151 2648 ntBASIC16.29■□□□□ 0.2
VPS13CQ709C8 KRT8P45-201ENST00000414328 1447 ntBASIC16.29■□□□□ 0.2
VPS13CQ709C8 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS13CQ709C8 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VPS13CQ709C8 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS13CQ709C8 AL732292.2-201ENST00000609649 430 ntBASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms