Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 HLA-G-202ENST00000376815 851 ntBASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 HLA-G-203ENST00000376818 1127 ntBASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 AL441883.1-201ENST00000566170 1045 ntBASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 TFP1-202ENST00000475455 1573 ntBASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CSPG4Q6UVK1 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 AL136038.3-201ENST00000561909 1096 ntBASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 AC141257.4-201ENST00000634557 245 ntBASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 AC136944.6-201ENST00000634818 245 ntBASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 ECEL1P1-201ENST00000373592 1742 ntBASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 KRT8P17-201ENST00000453110 1448 ntBASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 AL671277.2-201ENST00000458060 996 ntBASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 AC011298.2-201ENST00000617989 482 ntBASIC16.1■□□□□ 0.17
CSPG4Q6UVK1 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 KRT8P45-201ENST00000414328 1447 ntBASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 TSPY21P-201ENST00000433481 731 ntBASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 TSPY23P-201ENST00000440136 739 ntBASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 AC131212.4-201ENST00000623606 975 ntBASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 AL031432.5-201ENST00000641059 760 ntBASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CSPG4Q6UVK1 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 AC004980.1-204ENST00000429707 299 ntBASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 TSPY17P-201ENST00000450329 467 ntBASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 PRSS44-201ENST00000515154 1146 ntBASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 AC116351.2-201ENST00000606540 1585 ntBASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
CSPG4Q6UVK1 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 AC083849.1-201ENST00000615227 514 ntBASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC16.08■□□□□ 0.16
CSPG4Q6UVK1 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms