Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
KRT39Q6A163 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
KRT39Q6A163 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.08■□□□□ 0.96
KRT39Q6A163 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
KRT39Q6A163 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
KRT39Q6A163 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
KRT39Q6A163 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.07■□□□□ 0.96
KRT39Q6A163 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 AC239809.2-201ENST00000415381 517 ntBASIC21.07■□□□□ 0.96
KRT39Q6A163 TSPY20P-201ENST00000450910 630 ntBASIC21.07■□□□□ 0.96
KRT39Q6A163 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.07■□□□□ 0.96
KRT39Q6A163 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
KRT39Q6A163 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.07■□□□□ 0.96
KRT39Q6A163 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.07■□□□□ 0.96
KRT39Q6A163 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
KRT39Q6A163 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.07■□□□□ 0.96
KRT39Q6A163 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
KRT39Q6A163 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
KRT39Q6A163 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.07■□□□□ 0.96
KRT39Q6A163 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
KRT39Q6A163 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT39Q6A163 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
KRT39Q6A163 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
KRT39Q6A163 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
KRT39Q6A163 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT39Q6A163 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT39Q6A163 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.06■□□□□ 0.96
KRT39Q6A163 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT39Q6A163 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT39Q6A163 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT39Q6A163 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.06■□□□□ 0.96
KRT39Q6A163 AC004264.1-201ENST00000608354 794 ntBASIC21.06■□□□□ 0.96
KRT39Q6A163 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
KRT39Q6A163 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
KRT39Q6A163 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.06■□□□□ 0.96
KRT39Q6A163 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.06■□□□□ 0.96
KRT39Q6A163 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
KRT39Q6A163 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
KRT39Q6A163 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
KRT39Q6A163 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.05■□□□□ 0.96
KRT39Q6A163 Z82202.1-201ENST00000623446 1880 ntBASIC21.05■□□□□ 0.96
KRT39Q6A163 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
KRT39Q6A163 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 KRASP1-201ENST00000407852 552 ntBASIC21.05■□□□□ 0.96
KRT39Q6A163 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.05■□□□□ 0.96
KRT39Q6A163 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.05■□□□□ 0.96
KRT39Q6A163 AC133681.1-201ENST00000465482 601 ntBASIC21.05■□□□□ 0.96
KRT39Q6A163 AC124016.1-201ENST00000609552 612 ntBASIC21.05■□□□□ 0.96
KRT39Q6A163 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.05■□□□□ 0.96
KRT39Q6A163 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.05■□□□□ 0.96
KRT39Q6A163 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.05■□□□□ 0.96
KRT39Q6A163 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 AC007952.6-201ENST00000573168 2673 ntBASIC21.05■□□□□ 0.96
KRT39Q6A163 AC003957.1-201ENST00000625108 2673 ntBASIC21.05■□□□□ 0.96
KRT39Q6A163 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
KRT39Q6A163 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
KRT39Q6A163 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
KRT39Q6A163 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT39Q6A163 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.04■□□□□ 0.96
KRT39Q6A163 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms