Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.18□□□□□ -0.14
PRKDCP78527 AP005901.3-202ENST00000581653 237 ntBASIC14.18□□□□□ -0.14
PRKDCP78527 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC14.18□□□□□ -0.14
PRKDCP78527 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC14.18□□□□□ -0.14
PRKDCP78527 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 AC012615.1-201ENST00000565797 1299 ntBASIC14.18□□□□□ -0.14
PRKDCP78527 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 ABBA01031661.1-201ENST00000634362 1253 ntBASIC14.18□□□□□ -0.14
PRKDCP78527 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC14.18□□□□□ -0.14
PRKDCP78527 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
PRKDCP78527 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 ILF2-202ENST00000368681 726 ntTSL 2 BASIC14.17□□□□□ -0.14
PRKDCP78527 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 RPL18-209ENST00000550645 463 ntTSL 5 BASIC14.17□□□□□ -0.14
PRKDCP78527 RPL18-214ENST00000552588 559 ntTSL 3 BASIC14.17□□□□□ -0.14
PRKDCP78527 PNN-202ENST00000553331 656 ntTSL 3 BASIC14.17□□□□□ -0.14
PRKDCP78527 MIR4674-201ENST00000582457 87 ntBASIC14.17□□□□□ -0.14
PRKDCP78527 TFP1-202ENST00000475455 1573 ntBASIC14.17□□□□□ -0.14
PRKDCP78527 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC14.17□□□□□ -0.14
PRKDCP78527 CD37-204ENST00000535669 1674 ntTSL 2 BASIC14.17□□□□□ -0.14
PRKDCP78527 AL162741.1-201ENST00000565563 1558 ntBASIC14.17□□□□□ -0.14
PRKDCP78527 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
PRKDCP78527 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
PRKDCP78527 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.17□□□□□ -0.14
PRKDCP78527 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC14.17□□□□□ -0.14
PRKDCP78527 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 AC005104.2-201ENST00000427818 678 ntBASIC14.17□□□□□ -0.14
PRKDCP78527 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC14.17□□□□□ -0.14
PRKDCP78527 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14.17□□□□□ -0.14
PRKDCP78527 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC14.17□□□□□ -0.14
PRKDCP78527 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC14.17□□□□□ -0.14
PRKDCP78527 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC14.17□□□□□ -0.14
PRKDCP78527 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
PRKDCP78527 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC14.17□□□□□ -0.14
PRKDCP78527 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC14.17□□□□□ -0.14
PRKDCP78527 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
PRKDCP78527 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC14.16□□□□□ -0.14
PRKDCP78527 H19-201ENST00000411754 1788 ntTSL 5 BASIC14.16□□□□□ -0.14
PRKDCP78527 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC14.16□□□□□ -0.14
PRKDCP78527 SAPCD2P3-201ENST00000455031 850 ntBASIC14.16□□□□□ -0.14
PRKDCP78527 CA15P1-201ENST00000481698 905 ntBASIC14.16□□□□□ -0.14
PRKDCP78527 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC14.16□□□□□ -0.14
PRKDCP78527 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.16□□□□□ -0.14
PRKDCP78527 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.16□□□□□ -0.14
PRKDCP78527 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
PRKDCP78527 HLA-G-203ENST00000376818 1127 ntBASIC14.16□□□□□ -0.14
PRKDCP78527 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.16□□□□□ -0.14
PRKDCP78527 HLA-F-220ENST00000434407 884 ntBASIC14.16□□□□□ -0.14
PRKDCP78527 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC14.16□□□□□ -0.14
PRKDCP78527 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC14.16□□□□□ -0.14
PRKDCP78527 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PRKDCP78527 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC14.16□□□□□ -0.14
PRKDCP78527 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
PRKDCP78527 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
PRKDCP78527 MIR940-201ENST00000401276 94 ntBASIC14.16□□□□□ -0.14
PRKDCP78527 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.16□□□□□ -0.14
PRKDCP78527 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
PRKDCP78527 AC116351.2-201ENST00000606540 1585 ntBASIC14.15□□□□□ -0.14
PRKDCP78527 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
PRKDCP78527 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PRKDCP78527 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
PRKDCP78527 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
PRKDCP78527 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.15□□□□□ -0.14
PRKDCP78527 AL353801.3-201ENST00000609898 542 ntBASIC14.15□□□□□ -0.14
PRKDCP78527 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC14.15□□□□□ -0.14
PRKDCP78527 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
PRKDCP78527 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PRKDCP78527 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14.15□□□□□ -0.14
PRKDCP78527 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC14.15□□□□□ -0.14
PRKDCP78527 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC14.15□□□□□ -0.14
PRKDCP78527 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PRKDCP78527 LINC00265-3P-201ENST00000447588 903 ntBASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms