Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A4P53420 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
COL4A4P53420 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A4P53420 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A4P53420 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A4P53420 TSPY21P-201ENST00000433481 731 ntBASIC20.94■□□□□ 0.94
COL4A4P53420 TSPY23P-201ENST00000440136 739 ntBASIC20.94■□□□□ 0.94
COL4A4P53420 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.94■□□□□ 0.94
COL4A4P53420 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.94■□□□□ 0.94
COL4A4P53420 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A4P53420 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.94■□□□□ 0.94
COL4A4P53420 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
COL4A4P53420 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.94■□□□□ 0.94
COL4A4P53420 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A4P53420 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
COL4A4P53420 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A4P53420 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A4P53420 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A4P53420 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A4P53420 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.93■□□□□ 0.94
COL4A4P53420 AL441883.1-201ENST00000566170 1045 ntBASIC20.93■□□□□ 0.94
COL4A4P53420 AC130371.2-201ENST00000619443 611 ntBASIC20.93■□□□□ 0.94
COL4A4P53420 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.93■□□□□ 0.94
COL4A4P53420 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A4P53420 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A4P53420 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A4P53420 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A4P53420 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A4P53420 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A4P53420 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A4P53420 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A4P53420 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A4P53420 AP000692.2-201ENST00000608391 879 ntBASIC20.93■□□□□ 0.94
COL4A4P53420 AC116562.4-202ENST00000641738 218 ntBASIC20.93■□□□□ 0.94
COL4A4P53420 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.92■□□□□ 0.94
COL4A4P53420 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL4A4P53420 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
COL4A4P53420 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 AC004951.3-201ENST00000418645 1148 ntBASIC20.92■□□□□ 0.94
COL4A4P53420 AC246785.2-201ENST00000432512 513 ntBASIC20.92■□□□□ 0.94
COL4A4P53420 AC112907.2-201ENST00000448639 330 ntBASIC20.92■□□□□ 0.94
COL4A4P53420 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.92■□□□□ 0.94
COL4A4P53420 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.92■□□□□ 0.94
COL4A4P53420 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
COL4A4P53420 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A4P53420 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.92■□□□□ 0.94
COL4A4P53420 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COL4A4P53420 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
COL4A4P53420 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COL4A4P53420 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
COL4A4P53420 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COL4A4P53420 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
COL4A4P53420 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.91■□□□□ 0.94
COL4A4P53420 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.91■□□□□ 0.94
COL4A4P53420 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.91■□□□□ 0.94
COL4A4P53420 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
COL4A4P53420 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A4P53420 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.9■□□□□ 0.94
COL4A4P53420 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A4P53420 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A4P53420 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.9■□□□□ 0.94
COL4A4P53420 TUBB8P6-201ENST00000436895 1288 ntBASIC20.9■□□□□ 0.94
COL4A4P53420 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.9■□□□□ 0.94
COL4A4P53420 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A4P53420 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A4P53420 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A4P53420 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COL4A4P53420 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.9■□□□□ 0.94
COL4A4P53420 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A4P53420 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.9■□□□□ 0.94
COL4A4P53420 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.9■□□□□ 0.94
COL4A4P53420 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
COL4A4P53420 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A4P53420 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COL4A4P53420 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL4A4P53420 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL4A4P53420 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL4A4P53420 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL4A4P53420 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.89■□□□□ 0.94
COL4A4P53420 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms