Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
CUX1P39880 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC32.84■■■□□ 2.85
CUX1P39880 MIR4674-201ENST00000582457 87 ntBASIC32.84■■■□□ 2.85
CUX1P39880 NPAP1P7-201ENST00000613027 823 ntBASIC32.84■■■□□ 2.85
CUX1P39880 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC32.84■■■□□ 2.85
CUX1P39880 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC32.84■■■□□ 2.85
CUX1P39880 AP001271.2-201ENST00000624018 1556 ntBASIC32.84■■■□□ 2.85
CUX1P39880 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC32.84■■■□□ 2.85
CUX1P39880 AC012676.1-201ENST00000574705 1949 ntBASIC32.84■■■□□ 2.85
CUX1P39880 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC32.84■■■□□ 2.85
CUX1P39880 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC32.84■■■□□ 2.85
CUX1P39880 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC32.84■■■□□ 2.85
CUX1P39880 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC32.84■■■□□ 2.85
CUX1P39880 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
CUX1P39880 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
CUX1P39880 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
CUX1P39880 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
CUX1P39880 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC32.83■■■□□ 2.85
CUX1P39880 STARP1-201ENST00000397973 869 ntBASIC32.83■■■□□ 2.85
CUX1P39880 AC026396.1-201ENST00000419388 421 ntBASIC32.83■■■□□ 2.85
CUX1P39880 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC32.83■■■□□ 2.85
CUX1P39880 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC32.83■■■□□ 2.85
CUX1P39880 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC32.83■■■□□ 2.85
CUX1P39880 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC32.83■■■□□ 2.85
CUX1P39880 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC32.83■■■□□ 2.85
CUX1P39880 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC32.83■■■□□ 2.85
CUX1P39880 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC32.83■■■□□ 2.85
CUX1P39880 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC32.83■■■□□ 2.85
CUX1P39880 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC32.83■■■□□ 2.85
CUX1P39880 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC32.82■■■□□ 2.85
CUX1P39880 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.85
CUX1P39880 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.85
CUX1P39880 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC32.82■■■□□ 2.85
CUX1P39880 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC32.82■■■□□ 2.85
CUX1P39880 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC32.82■■■□□ 2.85
CUX1P39880 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.85
CUX1P39880 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC32.82■■■□□ 2.85
CUX1P39880 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC32.82■■■□□ 2.84
CUX1P39880 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC32.82■■■□□ 2.84
CUX1P39880 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CUX1P39880 KRT8P11-201ENST00000409686 1436 ntBASIC32.82■■■□□ 2.84
CUX1P39880 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC32.82■■■□□ 2.84
CUX1P39880 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC32.82■■■□□ 2.84
CUX1P39880 AP000523.1-201ENST00000398242 1049 ntBASIC32.82■■■□□ 2.84
CUX1P39880 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC32.82■■■□□ 2.84
CUX1P39880 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC32.82■■■□□ 2.84
CUX1P39880 NEK4P2-201ENST00000580004 1012 ntBASIC32.82■■■□□ 2.84
CUX1P39880 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CUX1P39880 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC32.81■■■□□ 2.84
CUX1P39880 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CUX1P39880 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC32.81■■■□□ 2.84
CUX1P39880 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC32.81■■■□□ 2.84
CUX1P39880 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CUX1P39880 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CUX1P39880 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CUX1P39880 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CUX1P39880 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CUX1P39880 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC32.81■■■□□ 2.84
CUX1P39880 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CUX1P39880 ATP5G2P1-201ENST00000433580 426 ntBASIC32.81■■■□□ 2.84
CUX1P39880 LY6E-213ENST00000522528 606 ntTSL 3 BASIC32.81■■■□□ 2.84
CUX1P39880 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC32.81■■■□□ 2.84
CUX1P39880 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC32.81■■■□□ 2.84
CUX1P39880 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC32.81■■■□□ 2.84
CUX1P39880 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC32.8■■■□□ 2.84
CUX1P39880 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC32.8■■■□□ 2.84
CUX1P39880 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
CUX1P39880 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC32.8■■■□□ 2.84
CUX1P39880 ILF2-202ENST00000368681 726 ntTSL 2 BASIC32.8■■■□□ 2.84
CUX1P39880 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CUX1P39880 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CUX1P39880 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC32.79■■■□□ 2.84
CUX1P39880 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC32.79■■■□□ 2.84
CUX1P39880 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC32.79■■■□□ 2.84
CUX1P39880 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC32.79■■■□□ 2.84
CUX1P39880 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC32.79■■■□□ 2.84
CUX1P39880 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
CUX1P39880 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
CUX1P39880 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CUX1P39880 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC32.78■■■□□ 2.84
CUX1P39880 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC32.78■■■□□ 2.84
CUX1P39880 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC32.78■■■□□ 2.84
CUX1P39880 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CUX1P39880 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC32.78■■■□□ 2.84
CUX1P39880 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC32.78■■■□□ 2.84
CUX1P39880 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CUX1P39880 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CUX1P39880 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
CUX1P39880 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC32.78■■■□□ 2.84
CUX1P39880 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC32.77■■■□□ 2.84
CUX1P39880 GCSHP2-201ENST00000560971 527 ntBASIC32.77■■■□□ 2.84
CUX1P39880 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC32.77■■■□□ 2.84
CUX1P39880 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
CUX1P39880 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
CUX1P39880 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC32.77■■■□□ 2.84
CUX1P39880 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
CUX1P39880 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
CUX1P39880 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC32.77■■■□□ 2.84
CUX1P39880 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
CUX1P39880 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC32.76■■■□□ 2.84
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms