Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHMT2P34897 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SHMT2P34897 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SHMT2P34897 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHMT2P34897 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHMT2P34897 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SHMT2P34897 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.1■□□□□ 0.65
SHMT2P34897 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHMT2P34897 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHMT2P34897 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHMT2P34897 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.1■□□□□ 0.65
SHMT2P34897 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.1■□□□□ 0.65
SHMT2P34897 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.1■□□□□ 0.65
SHMT2P34897 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.1■□□□□ 0.65
SHMT2P34897 AC004264.1-201ENST00000608354 794 ntBASIC19.1■□□□□ 0.65
SHMT2P34897 AP006294.2-201ENST00000641667 209 ntBASIC19.1■□□□□ 0.65
SHMT2P34897 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.1■□□□□ 0.65
SHMT2P34897 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.1■□□□□ 0.65
SHMT2P34897 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SHMT2P34897 AL691432.2-201ENST00000607222 2038 ntBASIC19.1■□□□□ 0.65
SHMT2P34897 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SHMT2P34897 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.1■□□□□ 0.65
SHMT2P34897 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHMT2P34897 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.1■□□□□ 0.65
SHMT2P34897 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHMT2P34897 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHMT2P34897 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SHMT2P34897 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHMT2P34897 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHMT2P34897 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SHMT2P34897 YBX1P10-201ENST00000444752 975 ntBASIC19.09■□□□□ 0.65
SHMT2P34897 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHMT2P34897 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SHMT2P34897 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.09■□□□□ 0.65
SHMT2P34897 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.09■□□□□ 0.65
SHMT2P34897 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.09■□□□□ 0.65
SHMT2P34897 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHMT2P34897 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHMT2P34897 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHMT2P34897 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.09■□□□□ 0.65
SHMT2P34897 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.09■□□□□ 0.65
SHMT2P34897 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHMT2P34897 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.08■□□□□ 0.65
SHMT2P34897 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.08■□□□□ 0.65
SHMT2P34897 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHMT2P34897 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
SHMT2P34897 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHMT2P34897 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
SHMT2P34897 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHMT2P34897 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
SHMT2P34897 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHMT2P34897 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.08■□□□□ 0.64
SHMT2P34897 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.08■□□□□ 0.64
SHMT2P34897 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.08■□□□□ 0.64
SHMT2P34897 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHMT2P34897 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.08■□□□□ 0.64
SHMT2P34897 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.08■□□□□ 0.64
SHMT2P34897 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
SHMT2P34897 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHMT2P34897 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHMT2P34897 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHMT2P34897 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHMT2P34897 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHMT2P34897 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.08■□□□□ 0.64
SHMT2P34897 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHMT2P34897 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHMT2P34897 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SHMT2P34897 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHMT2P34897 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHMT2P34897 BX323043.1-201ENST00000641006 1765 ntBASIC19.07■□□□□ 0.64
SHMT2P34897 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SHMT2P34897 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.07■□□□□ 0.64
SHMT2P34897 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHMT2P34897 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHMT2P34897 KRT16P5-201ENST00000455284 522 ntBASIC19.07■□□□□ 0.64
SHMT2P34897 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.07■□□□□ 0.64
SHMT2P34897 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHMT2P34897 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHMT2P34897 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHMT2P34897 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHMT2P34897 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
SHMT2P34897 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHMT2P34897 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHMT2P34897 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
SHMT2P34897 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 AC009237.14-201ENST00000609975 1594 ntBASIC19.06■□□□□ 0.64
SHMT2P34897 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
SHMT2P34897 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SHMT2P34897 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.06■□□□□ 0.64
SHMT2P34897 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SHMT2P34897 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHMT2P34897 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.06■□□□□ 0.64
SHMT2P34897 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms