Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A5P29400 STARP1-201ENST00000397973 869 ntBASIC23.56■■□□□ 1.36
COL4A5P29400 AP000347.1-202ENST00000435868 847 ntBASIC23.56■■□□□ 1.36
COL4A5P29400 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A5P29400 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A5P29400 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC23.56■■□□□ 1.36
COL4A5P29400 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC23.56■■□□□ 1.36
COL4A5P29400 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A5P29400 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL4A5P29400 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC23.56■■□□□ 1.36
COL4A5P29400 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
COL4A5P29400 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A5P29400 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A5P29400 AP000523.1-201ENST00000398242 1049 ntBASIC23.55■■□□□ 1.36
COL4A5P29400 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A5P29400 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A5P29400 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
COL4A5P29400 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC23.55■■□□□ 1.36
COL4A5P29400 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC23.55■■□□□ 1.36
COL4A5P29400 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A5P29400 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
COL4A5P29400 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A5P29400 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.55■■□□□ 1.36
COL4A5P29400 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A5P29400 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A5P29400 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A5P29400 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC23.54■■□□□ 1.36
COL4A5P29400 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A5P29400 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC23.54■■□□□ 1.36
COL4A5P29400 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A5P29400 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
COL4A5P29400 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC23.54■■□□□ 1.36
COL4A5P29400 MIR4674-201ENST00000582457 87 ntBASIC23.54■■□□□ 1.36
COL4A5P29400 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A5P29400 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC23.54■■□□□ 1.36
COL4A5P29400 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A5P29400 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A5P29400 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A5P29400 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC23.54■■□□□ 1.36
COL4A5P29400 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A5P29400 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A5P29400 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A5P29400 BX119927.1-201ENST00000636596 1552 ntBASIC23.54■■□□□ 1.36
COL4A5P29400 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A5P29400 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC23.54■■□□□ 1.36
COL4A5P29400 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A5P29400 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A5P29400 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A5P29400 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.53■■□□□ 1.36
COL4A5P29400 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC23.53■■□□□ 1.36
COL4A5P29400 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A5P29400 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A5P29400 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23.53■■□□□ 1.36
COL4A5P29400 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC23.53■■□□□ 1.36
COL4A5P29400 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A5P29400 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A5P29400 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A5P29400 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A5P29400 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC23.53■■□□□ 1.36
COL4A5P29400 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC23.52■■□□□ 1.36
COL4A5P29400 LINC01311-201ENST00000565162 1445 ntBASIC23.52■■□□□ 1.36
COL4A5P29400 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A5P29400 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC23.52■■□□□ 1.36
COL4A5P29400 AC140113.3-201ENST00000605663 199 ntBASIC23.52■■□□□ 1.36
COL4A5P29400 BCL10-202ENST00000620248 774 ntTSL 5 BASIC23.52■■□□□ 1.36
COL4A5P29400 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC23.52■■□□□ 1.36
COL4A5P29400 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC23.52■■□□□ 1.36
COL4A5P29400 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
COL4A5P29400 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A5P29400 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A5P29400 SKP2-204ENST00000508514 821 ntTSL 3 BASIC23.51■■□□□ 1.35
COL4A5P29400 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC23.51■■□□□ 1.35
COL4A5P29400 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC23.51■■□□□ 1.35
COL4A5P29400 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC23.51■■□□□ 1.35
COL4A5P29400 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A5P29400 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A5P29400 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.51■■□□□ 1.35
COL4A5P29400 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A5P29400 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A5P29400 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A5P29400 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC23.51■■□□□ 1.35
COL4A5P29400 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A5P29400 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A5P29400 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A5P29400 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A5P29400 FDX1P1-201ENST00000449115 551 ntBASIC23.51■■□□□ 1.35
COL4A5P29400 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
COL4A5P29400 AC092119.3-201ENST00000612618 583 ntBASIC23.51■■□□□ 1.35
COL4A5P29400 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC23.51■■□□□ 1.35
COL4A5P29400 AL691432.3-201ENST00000621860 400 ntBASIC23.51■■□□□ 1.35
COL4A5P29400 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A5P29400 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL4A5P29400 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL4A5P29400 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
COL4A5P29400 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.5■■□□□ 1.35
COL4A5P29400 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.5■■□□□ 1.35
COL4A5P29400 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL4A5P29400 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL4A5P29400 FEM1AP1-201ENST00000431297 1995 ntBASIC23.5■■□□□ 1.35
COL4A5P29400 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms