Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
VCANP13611 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VCANP13611 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
VCANP13611 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.26■□□□□ 0.83
VCANP13611 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.26■□□□□ 0.83
VCANP13611 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VCANP13611 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VCANP13611 AC012615.1-201ENST00000565797 1299 ntBASIC20.26■□□□□ 0.83
VCANP13611 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC20.26■□□□□ 0.83
VCANP13611 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.26■□□□□ 0.83
VCANP13611 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.26■□□□□ 0.83
VCANP13611 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.26■□□□□ 0.83
VCANP13611 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.26■□□□□ 0.83
VCANP13611 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCANP13611 AP006587.1-201ENST00000534129 1502 ntBASIC20.26■□□□□ 0.83
VCANP13611 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
VCANP13611 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VCANP13611 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
VCANP13611 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VCANP13611 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCANP13611 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.25■□□□□ 0.83
VCANP13611 AP003041.3-201ENST00000527151 707 ntBASIC20.25■□□□□ 0.83
VCANP13611 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCANP13611 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCANP13611 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
VCANP13611 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.25■□□□□ 0.83
VCANP13611 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.25■□□□□ 0.83
VCANP13611 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC20.25■□□□□ 0.83
VCANP13611 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VCANP13611 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.25■□□□□ 0.83
VCANP13611 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.25■□□□□ 0.83
VCANP13611 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VCANP13611 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
VCANP13611 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VCANP13611 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.24■□□□□ 0.83
VCANP13611 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.24■□□□□ 0.83
VCANP13611 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCANP13611 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.24■□□□□ 0.83
VCANP13611 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.24■□□□□ 0.83
VCANP13611 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
VCANP13611 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCANP13611 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VCANP13611 AL121603.2-201ENST00000557373 2117 ntBASIC20.24■□□□□ 0.83
VCANP13611 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.24■□□□□ 0.83
VCANP13611 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCANP13611 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
VCANP13611 BX276092.5-203ENST00000456199 560 ntBASIC20.24■□□□□ 0.83
VCANP13611 AC011298.2-201ENST00000617989 482 ntBASIC20.24■□□□□ 0.83
VCANP13611 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCANP13611 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCANP13611 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCANP13611 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCANP13611 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.23■□□□□ 0.83
VCANP13611 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.23■□□□□ 0.83
VCANP13611 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.23■□□□□ 0.83
VCANP13611 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.23■□□□□ 0.83
VCANP13611 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.23■□□□□ 0.83
VCANP13611 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VCANP13611 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VCANP13611 HLA-G-202ENST00000376815 851 ntBASIC20.23■□□□□ 0.83
VCANP13611 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.23■□□□□ 0.83
VCANP13611 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.23■□□□□ 0.83
VCANP13611 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VCANP13611 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.23■□□□□ 0.83
VCANP13611 Z85996.1-201ENST00000494644 937 ntBASIC20.23■□□□□ 0.83
VCANP13611 PMS2P7-201ENST00000506558 1336 ntBASIC20.23■□□□□ 0.83
VCANP13611 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.23■□□□□ 0.83
VCANP13611 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.23■□□□□ 0.83
VCANP13611 LINC00167-201ENST00000530583 1419 ntBASIC20.23■□□□□ 0.83
VCANP13611 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.23■□□□□ 0.83
VCANP13611 AL353801.3-201ENST00000609898 542 ntBASIC20.23■□□□□ 0.83
VCANP13611 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.23■□□□□ 0.83
VCANP13611 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.23■□□□□ 0.83
VCANP13611 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCANP13611 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.23■□□□□ 0.83
VCANP13611 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCANP13611 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.22■□□□□ 0.83
VCANP13611 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
VCANP13611 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
VCANP13611 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.22■□□□□ 0.83
VCANP13611 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
VCANP13611 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.22■□□□□ 0.83
VCANP13611 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
VCANP13611 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCANP13611 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCANP13611 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
VCANP13611 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VCANP13611 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VCANP13611 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms