Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.2■□□□□ 0.02
COL6A5A8TX70 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
COL6A5A8TX70 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.2■□□□□ 0.02
COL6A5A8TX70 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.2■□□□□ 0.02
COL6A5A8TX70 FOSL1P1-201ENST00000511041 816 ntBASIC15.2■□□□□ 0.02
COL6A5A8TX70 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.2■□□□□ 0.02
COL6A5A8TX70 AC243591.1-201ENST00000452967 1364 ntBASIC15.2■□□□□ 0.02
COL6A5A8TX70 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A5A8TX70 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A5A8TX70 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 WDR6-223ENST00000627177 207 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A5A8TX70 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A5A8TX70 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A5A8TX70 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A5A8TX70 AC116351.2-201ENST00000606540 1585 ntBASIC15.19■□□□□ 0.02
COL6A5A8TX70 KRT8P20-201ENST00000423953 1409 ntBASIC15.19■□□□□ 0.02
COL6A5A8TX70 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL6A5A8TX70 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.19■□□□□ 0.02
COL6A5A8TX70 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL6A5A8TX70 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL6A5A8TX70 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC15.18■□□□□ 0.02
COL6A5A8TX70 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 AC098831.1-202ENST00000438821 336 ntBASIC15.17■□□□□ 0.02
COL6A5A8TX70 SAPCD2P3-201ENST00000455031 850 ntBASIC15.17■□□□□ 0.02
COL6A5A8TX70 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.17■□□□□ 0.02
COL6A5A8TX70 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.17■□□□□ 0.02
COL6A5A8TX70 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
COL6A5A8TX70 TOB2P1-201ENST00000469761 992 ntBASIC15.17■□□□□ 0.02
COL6A5A8TX70 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.17■□□□□ 0.02
COL6A5A8TX70 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
COL6A5A8TX70 AP001005.1-201ENST00000571755 1248 ntBASIC15.17■□□□□ 0.02
COL6A5A8TX70 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.17■□□□□ 0.02
COL6A5A8TX70 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL6A5A8TX70 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms