Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC26.44■■□□□ 1.82
Trim47Q8C0E3 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Trim47Q8C0E3 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
Trim47Q8C0E3 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.42■■□□□ 1.82
Trim47Q8C0E3 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Trim47Q8C0E3 Gm11599-201ENSMUST00000118720 878 ntBASIC26.39■■□□□ 1.82
Trim47Q8C0E3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC26.38■■□□□ 1.81
Trim47Q8C0E3 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Trim47Q8C0E3 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
Trim47Q8C0E3 Particl-201ENSMUST00000205370 1560 ntBASIC26.36■■□□□ 1.81
Trim47Q8C0E3 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim47Q8C0E3 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Trim47Q8C0E3 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Trim47Q8C0E3 AC131739.1-201ENSMUST00000221692 1245 ntBASIC26.33■■□□□ 1.81
Trim47Q8C0E3 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Trim47Q8C0E3 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Trim47Q8C0E3 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC26.31■■□□□ 1.8
Trim47Q8C0E3 Fezf2-202ENSMUST00000224023 1917 ntBASIC26.31■■□□□ 1.8
Trim47Q8C0E3 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim47Q8C0E3 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim47Q8C0E3 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim47Q8C0E3 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC26.28■■□□□ 1.8
Trim47Q8C0E3 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim47Q8C0E3 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Trim47Q8C0E3 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trim47Q8C0E3 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Trim47Q8C0E3 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim47Q8C0E3 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim47Q8C0E3 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim47Q8C0E3 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim47Q8C0E3 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim47Q8C0E3 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim47Q8C0E3 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim47Q8C0E3 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim47Q8C0E3 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim47Q8C0E3 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Trim47Q8C0E3 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC26.23■■□□□ 1.79
Trim47Q8C0E3 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Trim47Q8C0E3 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trim47Q8C0E3 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC26.22■■□□□ 1.79
Trim47Q8C0E3 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim47Q8C0E3 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Trim47Q8C0E3 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim47Q8C0E3 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim47Q8C0E3 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Trim47Q8C0E3 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC26.14■■□□□ 1.78
Trim47Q8C0E3 Gm37136-201ENSMUST00000194368 194 ntBASIC26.14■■□□□ 1.78
Trim47Q8C0E3 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
Trim47Q8C0E3 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
Trim47Q8C0E3 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.77
Trim47Q8C0E3 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Trim47Q8C0E3 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trim47Q8C0E3 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC26.13■■□□□ 1.77
Trim47Q8C0E3 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Trim47Q8C0E3 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
Trim47Q8C0E3 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Trim47Q8C0E3 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Trim47Q8C0E3 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim47Q8C0E3 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim47Q8C0E3 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Trim47Q8C0E3 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Trim47Q8C0E3 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Trim47Q8C0E3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Trim47Q8C0E3 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Trim47Q8C0E3 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Trim47Q8C0E3 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Trim47Q8C0E3 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Trim47Q8C0E3 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
Trim47Q8C0E3 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Trim47Q8C0E3 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC26.07■■□□□ 1.76
Trim47Q8C0E3 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Trim47Q8C0E3 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
Trim47Q8C0E3 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC26.06■■□□□ 1.76
Trim47Q8C0E3 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
Trim47Q8C0E3 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Trim47Q8C0E3 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC26.05■■□□□ 1.76
Trim47Q8C0E3 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
Trim47Q8C0E3 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC26.04■■□□□ 1.76
Trim47Q8C0E3 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Trim47Q8C0E3 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.04■■□□□ 1.76
Trim47Q8C0E3 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.04■■□□□ 1.76
Trim47Q8C0E3 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim47Q8C0E3 AC167019.3-201ENSMUST00000228225 1266 ntBASIC26.03■■□□□ 1.76
Trim47Q8C0E3 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim47Q8C0E3 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trim47Q8C0E3 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
Trim47Q8C0E3 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.01■■□□□ 1.75
Trim47Q8C0E3 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
Trim47Q8C0E3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
Trim47Q8C0E3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim47Q8C0E3 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim47Q8C0E3 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trim47Q8C0E3 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC25.98■■□□□ 1.75
Trim47Q8C0E3 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Trim47Q8C0E3 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
Trim47Q8C0E3 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
Trim47Q8C0E3 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Trim47Q8C0E3 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
Trim47Q8C0E3 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Trim47Q8C0E3 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms