Protein–RNA interactions for Protein: Q8BJF9

Chmp2b, Charged multivesicular body protein 2b, mousemouse

Predictions only

Length 213 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2bQ8BJF9 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Chmp2bQ8BJF9 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Chmp2bQ8BJF9 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Chmp2bQ8BJF9 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Chmp2bQ8BJF9 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
Chmp2bQ8BJF9 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Chmp2bQ8BJF9 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Chmp2bQ8BJF9 Gm24970-201ENSMUST00000175582 82 ntBASIC23.93■■□□□ 1.42
Chmp2bQ8BJF9 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC23.93■■□□□ 1.42
Chmp2bQ8BJF9 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Chmp2bQ8BJF9 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Chmp2bQ8BJF9 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
Chmp2bQ8BJF9 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Chmp2bQ8BJF9 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
Chmp2bQ8BJF9 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC23.9■■□□□ 1.42
Chmp2bQ8BJF9 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
Chmp2bQ8BJF9 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
Chmp2bQ8BJF9 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Chmp2bQ8BJF9 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Chmp2bQ8BJF9 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Chmp2bQ8BJF9 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Chmp2bQ8BJF9 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.41
Chmp2bQ8BJF9 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Chmp2bQ8BJF9 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Chmp2bQ8BJF9 Tdp2-203ENSMUST00000223804 1136 ntBASIC23.87■■□□□ 1.41
Chmp2bQ8BJF9 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Chmp2bQ8BJF9 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Chmp2bQ8BJF9 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Chmp2bQ8BJF9 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Chmp2bQ8BJF9 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Chmp2bQ8BJF9 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Chmp2bQ8BJF9 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Chmp2bQ8BJF9 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC23.85■■□□□ 1.41
Chmp2bQ8BJF9 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Chmp2bQ8BJF9 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
Chmp2bQ8BJF9 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC23.83■■□□□ 1.41
Chmp2bQ8BJF9 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Chmp2bQ8BJF9 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Chmp2bQ8BJF9 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
Chmp2bQ8BJF9 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Chmp2bQ8BJF9 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Chmp2bQ8BJF9 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
Chmp2bQ8BJF9 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
Chmp2bQ8BJF9 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Chmp2bQ8BJF9 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Chmp2bQ8BJF9 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
Chmp2bQ8BJF9 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Chmp2bQ8BJF9 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Chmp2bQ8BJF9 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Chmp2bQ8BJF9 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Chmp2bQ8BJF9 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Chmp2bQ8BJF9 Gm30023-201ENSMUST00000197970 889 ntBASIC23.8■■□□□ 1.4
Chmp2bQ8BJF9 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Chmp2bQ8BJF9 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Chmp2bQ8BJF9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Chmp2bQ8BJF9 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC23.79■■□□□ 1.4
Chmp2bQ8BJF9 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp2bQ8BJF9 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp2bQ8BJF9 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp2bQ8BJF9 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp2bQ8BJF9 Gm45855-201ENSMUST00000212546 880 ntBASIC23.79■■□□□ 1.4
Chmp2bQ8BJF9 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp2bQ8BJF9 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp2bQ8BJF9 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC23.79■■□□□ 1.4
Chmp2bQ8BJF9 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Chmp2bQ8BJF9 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC23.78■■□□□ 1.4
Chmp2bQ8BJF9 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Chmp2bQ8BJF9 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Chmp2bQ8BJF9 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Chmp2bQ8BJF9 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC23.77■■□□□ 1.4
Chmp2bQ8BJF9 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Chmp2bQ8BJF9 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Chmp2bQ8BJF9 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Chmp2bQ8BJF9 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp2bQ8BJF9 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp2bQ8BJF9 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC23.75■■□□□ 1.39
Chmp2bQ8BJF9 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp2bQ8BJF9 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Chmp2bQ8BJF9 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
Chmp2bQ8BJF9 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Chmp2bQ8BJF9 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Chmp2bQ8BJF9 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
Chmp2bQ8BJF9 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Chmp2bQ8BJF9 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Chmp2bQ8BJF9 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
Chmp2bQ8BJF9 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Chmp2bQ8BJF9 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Chmp2bQ8BJF9 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
Chmp2bQ8BJF9 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Chmp2bQ8BJF9 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Chmp2bQ8BJF9 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Chmp2bQ8BJF9 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Chmp2bQ8BJF9 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
Chmp2bQ8BJF9 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
Chmp2bQ8BJF9 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp2bQ8BJF9 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp2bQ8BJF9 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
Chmp2bQ8BJF9 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
Chmp2bQ8BJF9 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Chmp2bQ8BJF9 Gm37847-201ENSMUST00000192163 1497 ntBASIC23.68■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms