Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdh11P55288 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cdh11P55288 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cdh11P55288 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdh11P55288 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cdh11P55288 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.22■□□□□ 0.99
Cdh11P55288 Pcf11-205ENSMUST00000208255 1720 ntBASIC21.21■□□□□ 0.99
Cdh11P55288 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh11P55288 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh11P55288 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh11P55288 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh11P55288 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh11P55288 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh11P55288 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cdh11P55288 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cdh11P55288 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC21.2■□□□□ 0.98
Cdh11P55288 Gm8503-201ENSMUST00000118131 455 ntBASIC21.2■□□□□ 0.98
Cdh11P55288 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Cdh11P55288 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cdh11P55288 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cdh11P55288 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cdh11P55288 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cdh11P55288 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Cdh11P55288 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cdh11P55288 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Cdh11P55288 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC21.17■□□□□ 0.98
Cdh11P55288 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdh11P55288 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cdh11P55288 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdh11P55288 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdh11P55288 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Cdh11P55288 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.15■□□□□ 0.98
Cdh11P55288 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Cdh11P55288 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Cdh11P55288 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cdh11P55288 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cdh11P55288 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Cdh11P55288 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cdh11P55288 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cdh11P55288 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh11P55288 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh11P55288 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh11P55288 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cdh11P55288 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cdh11P55288 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cdh11P55288 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cdh11P55288 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.11■□□□□ 0.97
Cdh11P55288 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Cdh11P55288 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh11P55288 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC21.1■□□□□ 0.97
Cdh11P55288 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh11P55288 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh11P55288 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Cdh11P55288 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cdh11P55288 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cdh11P55288 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cdh11P55288 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cdh11P55288 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cdh11P55288 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cdh11P55288 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdh11P55288 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cdh11P55288 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdh11P55288 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cdh11P55288 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdh11P55288 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Cdh11P55288 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Cdh11P55288 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.04■□□□□ 0.96
Cdh11P55288 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cdh11P55288 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Cdh11P55288 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Cdh11P55288 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC21.03■□□□□ 0.96
Cdh11P55288 Gm42809-201ENSMUST00000198429 1138 ntBASIC21.03■□□□□ 0.96
Cdh11P55288 Nkain2-201ENSMUST00000092602 558 ntBASIC21.03■□□□□ 0.96
Cdh11P55288 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cdh11P55288 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cdh11P55288 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cdh11P55288 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cdh11P55288 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cdh11P55288 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cdh11P55288 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cdh11P55288 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC21■□□□□ 0.95
Cdh11P55288 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Cdh11P55288 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cdh11P55288 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cdh11P55288 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cdh11P55288 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cdh11P55288 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Cdh11P55288 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Cdh11P55288 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cdh11P55288 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cdh11P55288 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.99■□□□□ 0.95
Cdh11P55288 Gm5987-201ENSMUST00000196433 1151 ntBASIC20.99■□□□□ 0.95
Cdh11P55288 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdh11P55288 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdh11P55288 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cdh11P55288 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
Cdh11P55288 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.97■□□□□ 0.95
Cdh11P55288 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Cdh11P55288 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cdh11P55288 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms