Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC25.19■■□□□ 1.62
Shmt1P50431 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC25.19■■□□□ 1.62
Shmt1P50431 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
Shmt1P50431 Fezf2-202ENSMUST00000224023 1917 ntBASIC25.18■■□□□ 1.62
Shmt1P50431 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Shmt1P50431 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Shmt1P50431 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Shmt1P50431 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Shmt1P50431 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Shmt1P50431 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC25.16■■□□□ 1.62
Shmt1P50431 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
Shmt1P50431 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Shmt1P50431 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC25.12■■□□□ 1.61
Shmt1P50431 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Shmt1P50431 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Shmt1P50431 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Shmt1P50431 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Shmt1P50431 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Shmt1P50431 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC25.1■■□□□ 1.61
Shmt1P50431 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Shmt1P50431 Particl-201ENSMUST00000205370 1560 ntBASIC25.1■■□□□ 1.61
Shmt1P50431 Gm11599-201ENSMUST00000118720 878 ntBASIC25.09■■□□□ 1.61
Shmt1P50431 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC25.07■■□□□ 1.6
Shmt1P50431 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
Shmt1P50431 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Shmt1P50431 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Shmt1P50431 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
Shmt1P50431 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Shmt1P50431 AC131739.1-201ENSMUST00000221692 1245 ntBASIC25.05■■□□□ 1.6
Shmt1P50431 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC25.04■■□□□ 1.6
Shmt1P50431 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Shmt1P50431 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
Shmt1P50431 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Shmt1P50431 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC25.03■■□□□ 1.6
Shmt1P50431 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Shmt1P50431 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Shmt1P50431 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Shmt1P50431 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Shmt1P50431 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Shmt1P50431 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
Shmt1P50431 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Shmt1P50431 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC25■■□□□ 1.59
Shmt1P50431 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Shmt1P50431 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
Shmt1P50431 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
Shmt1P50431 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Shmt1P50431 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
Shmt1P50431 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Shmt1P50431 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Shmt1P50431 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC24.97■■□□□ 1.59
Shmt1P50431 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Shmt1P50431 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Shmt1P50431 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Shmt1P50431 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Shmt1P50431 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
Shmt1P50431 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Shmt1P50431 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
Shmt1P50431 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC24.94■■□□□ 1.58
Shmt1P50431 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
Shmt1P50431 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Shmt1P50431 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
Shmt1P50431 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
Shmt1P50431 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC24.9■■□□□ 1.58
Shmt1P50431 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Shmt1P50431 Gm37136-201ENSMUST00000194368 194 ntBASIC24.9■■□□□ 1.58
Shmt1P50431 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC24.9■■□□□ 1.58
Shmt1P50431 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Shmt1P50431 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Shmt1P50431 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Shmt1P50431 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Shmt1P50431 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Shmt1P50431 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Shmt1P50431 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Shmt1P50431 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
Shmt1P50431 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Shmt1P50431 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Shmt1P50431 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Shmt1P50431 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
Shmt1P50431 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
Shmt1P50431 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Shmt1P50431 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Shmt1P50431 Gm37847-201ENSMUST00000192163 1497 ntBASIC24.84■■□□□ 1.57
Shmt1P50431 Gm31748-201ENSMUST00000194938 1497 ntBASIC24.84■■□□□ 1.57
Shmt1P50431 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
Shmt1P50431 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC24.82■■□□□ 1.56
Shmt1P50431 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Shmt1P50431 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Shmt1P50431 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Shmt1P50431 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Shmt1P50431 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Shmt1P50431 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
Shmt1P50431 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC24.8■■□□□ 1.56
Shmt1P50431 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
Shmt1P50431 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
Shmt1P50431 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Shmt1P50431 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Shmt1P50431 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Shmt1P50431 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Shmt1P50431 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC24.76■■□□□ 1.55
Shmt1P50431 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms