Protein–RNA interactions for Protein: O70137

Alx3, Homeobox protein aristaless-like 3, mousemouse

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Alx3O70137 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.28■■□□□ 1
Alx3O70137 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.28■■□□□ 1
Alx3O70137 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.28■■□□□ 1
Alx3O70137 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Alx3O70137 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Alx3O70137 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Alx3O70137 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Alx3O70137 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Alx3O70137 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Alx3O70137 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Alx3O70137 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Alx3O70137 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Alx3O70137 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.24■□□□□ 0.99
Alx3O70137 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Alx3O70137 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Alx3O70137 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Alx3O70137 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Alx3O70137 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Alx3O70137 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Alx3O70137 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Alx3O70137 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Alx3O70137 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Alx3O70137 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Alx3O70137 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Alx3O70137 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Alx3O70137 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Alx3O70137 Gm45855-201ENSMUST00000212546 880 ntBASIC21.2■□□□□ 0.98
Alx3O70137 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Alx3O70137 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
Alx3O70137 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Alx3O70137 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Alx3O70137 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.19■□□□□ 0.98
Alx3O70137 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Alx3O70137 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Alx3O70137 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Alx3O70137 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Alx3O70137 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Alx3O70137 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Alx3O70137 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Alx3O70137 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Alx3O70137 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC21.16■□□□□ 0.98
Alx3O70137 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.15■□□□□ 0.98
Alx3O70137 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Alx3O70137 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Alx3O70137 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Alx3O70137 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.13■□□□□ 0.97
Alx3O70137 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Alx3O70137 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Alx3O70137 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
Alx3O70137 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Alx3O70137 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.12■□□□□ 0.97
Alx3O70137 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC21.12■□□□□ 0.97
Alx3O70137 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Alx3O70137 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Alx3O70137 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Alx3O70137 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Alx3O70137 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Alx3O70137 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21.11■□□□□ 0.97
Alx3O70137 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Alx3O70137 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Alx3O70137 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC21.1■□□□□ 0.97
Alx3O70137 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Alx3O70137 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Alx3O70137 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
Alx3O70137 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Alx3O70137 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Alx3O70137 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Alx3O70137 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Alx3O70137 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Alx3O70137 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Alx3O70137 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Alx3O70137 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Alx3O70137 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Alx3O70137 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Alx3O70137 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.04■□□□□ 0.96
Alx3O70137 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Alx3O70137 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Alx3O70137 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
Alx3O70137 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Alx3O70137 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Alx3O70137 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Alx3O70137 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Alx3O70137 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Alx3O70137 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Alx3O70137 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Alx3O70137 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Alx3O70137 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
Alx3O70137 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Alx3O70137 Gm30023-201ENSMUST00000197970 889 ntBASIC21.01■□□□□ 0.95
Alx3O70137 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.01■□□□□ 0.95
Alx3O70137 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Alx3O70137 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Alx3O70137 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Alx3O70137 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Alx3O70137 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Alx3O70137 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.99■□□□□ 0.95
Alx3O70137 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Alx3O70137 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Alx3O70137 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Alx3O70137 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 10.2 ms