Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Hmgb3O54879 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb3O54879 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb3O54879 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC19.45■□□□□ 0.7
Hmgb3O54879 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb3O54879 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb3O54879 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC19.44■□□□□ 0.7
Hmgb3O54879 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb3O54879 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb3O54879 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
Hmgb3O54879 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb3O54879 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb3O54879 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Hmgb3O54879 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.42■□□□□ 0.7
Hmgb3O54879 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Hmgb3O54879 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hmgb3O54879 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Hmgb3O54879 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hmgb3O54879 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb3O54879 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb3O54879 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb3O54879 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb3O54879 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
Hmgb3O54879 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb3O54879 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb3O54879 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb3O54879 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Hmgb3O54879 Peli2-204ENSMUST00000226513 1320 ntBASIC19.37■□□□□ 0.69
Hmgb3O54879 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb3O54879 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
Hmgb3O54879 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Hmgb3O54879 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.36■□□□□ 0.69
Hmgb3O54879 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb3O54879 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb3O54879 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
Hmgb3O54879 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Hmgb3O54879 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb3O54879 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb3O54879 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb3O54879 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb3O54879 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgb3O54879 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgb3O54879 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC19.33■□□□□ 0.69
Hmgb3O54879 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgb3O54879 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb3O54879 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgb3O54879 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb3O54879 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb3O54879 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb3O54879 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb3O54879 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgb3O54879 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb3O54879 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb3O54879 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb3O54879 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb3O54879 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgb3O54879 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb3O54879 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Hmgb3O54879 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgb3O54879 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Hmgb3O54879 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Hmgb3O54879 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb3O54879 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgb3O54879 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.29■□□□□ 0.68
Hmgb3O54879 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb3O54879 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Hmgb3O54879 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC19.28■□□□□ 0.68
Hmgb3O54879 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Hmgb3O54879 Pcf11-205ENSMUST00000208255 1720 ntBASIC19.28■□□□□ 0.68
Hmgb3O54879 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgb3O54879 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgb3O54879 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.27■□□□□ 0.68
Hmgb3O54879 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC19.27■□□□□ 0.67
Hmgb3O54879 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Hmgb3O54879 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Hmgb3O54879 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb3O54879 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Hmgb3O54879 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb3O54879 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgb3O54879 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb3O54879 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb3O54879 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb3O54879 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgb3O54879 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb3O54879 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgb3O54879 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Hmgb3O54879 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Hmgb3O54879 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb3O54879 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb3O54879 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb3O54879 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb3O54879 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgb3O54879 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb3O54879 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb3O54879 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.22■□□□□ 0.67
Hmgb3O54879 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgb3O54879 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Hmgb3O54879 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb3O54879 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgb3O54879 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 90 ms